Plant Circular RNA Database

Detail information of Os02g0807100_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0807100_circ_g.1
					
						ID in PlantcircBase
						osa_circ_017069
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 34480774-34483222  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0807100						
					
						Parent gene annotation
						
							Similar to Starch synthase V. (Os02t0807100-01);Hypothetical gen
e. (Os02t0807100-02);Hypothetical gene. (Os02t0807100-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0807100_circ_g.2 Os02g0807100_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0807100-01:9
Os02t0807100-02:2

General Information
CircRNA Name	Os02g0807100_circ_g.1
ID in PlantcircBase	osa_circ_017069
Alias	NA
Organism	Oryza sativa
Position	chr2: 34480774-34483222 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0807100
Parent gene annotation	Similar to Starch synthase V. (Os02t0807100-01);Hypothetical gen e. (Os02t0807100-02);Hypothetical gene. (Os02t0807100-03)
Parent gene strand	+
Alternative splicing	Os02g0807100_circ_g.2 Os02g0807100_circ_g.3
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0807100-01:9 Os02t0807100-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGATTTCTTGCAACTGAATGGACAACGGAGAGACAGCAATATTCCCTGAGTGTGTTTTGGAGA
AAGCATAGTGATGATTAGTACCAACGCACATTCAAGggaggtattgtatactcaaataaagttt
tgttaatgtcctcaaccctcccaagagatatggctatccaaggcttaggacatgggttggaagc
aacattaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1001
Transcript exons: 34480774-34480883,34480997-34481162,34481247-34481327,34
481414-34481482,34481606-34481719,34482206-34482267,3448
2401-34482497,34482659-34482859,34483122-34483222
GGAGGTATTGTATACTCAAATAAAGTTTTGTTAATGTCCTCAACCCTCCCAAGAGATATGGCTA
TCCAAGGCTTAGGACATGGGTTGGAAGCAACATTAACTACACACAAGGAGAAGGTGTTGGTTGC
TTCTCATGGATTGGATGGTGAACTTTGGGATCCATCCAAAGACATTTATCTTCCTCAGAGGTAT
TCTCCAAATGACATTGAAGGAAAATCATTTTGCAGAAAGACACTTAAGCGATGTGTTGGACTCC
ACAGTGGTTCTTCCGTTGTTGTTGGGTGTATCTGCAATGGTGATTCGAATACTGATGGTCTTAG
GGAAGCTGTTCGTGTTGCTCTGCATGGAGGTGCTCAGGTCATCTTCATGGAAAACAAAGGGCCT
GTGATGAACTCAACTGTGCAGGCATTAAAGGAAGAACTGAAGGGAGACAGAGTAATGTTTGTTG
AGATATACGATGAGGCCCTGGAACATTTGATATTTGCAGGCTCTGATATATTTCTGTGCTCTTC
CTTTTATGACCCATCGCTACAAATAGCGATTAGAGCAATAAAATATGGATCTGCACCAGTACAG
ATAAACTTTCCCAGTAATGGATCCAGGCAAACTGAGTGGCATGACTACCCTAGCACAGCCCTCT
CTCAGTACATCATCTCAACATATGGGGACATGTCCCTTTCTCAAGCTCTCGATGGCATTAAGAA
CAACCCTTCCCAGTGGGATTGGCGTATTAAGGATGCGATGTCAAAAGTTTTATCATGGGATGCT
GAGTGCTACGACCTACATTGGGAGGCTTATTCCGTTATTAGGAAGCTGTGAATGATGCATTTCT
CTGGGGACTGCATGGTACATCATCAGCTATCTAAATACAAGGCACAGTTTTTGCCCATAAACAA
TCCTGTTGATTTCTTGCAACTGAATGGACAACGGAGAGACAGCAATATTCCCTGAGTGTGTTTT
GGAGAAAGCATAGTGATGATTAGTACCAACGCACATTCAAG
						
					

						Genomic sequence
						
							GGAGGTATTGTATACTCAAATAAAGTTTTGTTAATGTCCTCAACCCTCCCAAGAGATATGGCTA
TCCAAGGCTTAGGACATGGGTTGGAAGCAACATTAACTACACACAAGTAATTATCATCTTGTTT
TGCTTTTTATATTTTCCTCCCTGTAGCCTGTAGGGCTAATGAATGTCCATGACTGCAGTTTCTT
GTTTCACACACAAATTTTGTTTTCTCTCCAGGGAGAAGGTGTTGGTTGCTTCTCATGGATTGGA
TGGTGAACTTTGGGATCCATCCAAAGACATTTATCTTCCTCAGAGGTATTCTCCAAATGACATT
GAAGGAAAATCATTTTGCAGAAAGACACTTAAGCGATGTGTTGGACTCCACAGTGGTTCTTCCG
TTGTTGTATGTACTTCTCATTGTCTTGCACAAAAAACATATTTTTGTTTAGTCATTACAGTGTT
TCATGAAGTTTATATCGTTTGTCAGGTTGGGTGTATCTGCAATGGTGATTCGAATACTGATGGT
CTTAGGGAAGCTGTTCGTGTTGCTCTGCATGGAGGTGCTCAGGTTTGTATTACTAATTATTAAT
TGAGGACCTTCACTTTGGACTCAGGCTCTCTACTAGCGCAGTTTTTAGAGTTTATACTGTGTAG
GTCATCTTCATGGAAAACAAAGGGCCTGTGATGAACTCAACTGTGCAGGCATTAAAGGAAGAAC
TGAAGGTATCAGTATTACTGTTCCATGTCTATCATCAGTAACCTGTGTAAAGCCTTCTGTGTTC
ACGGAGACTGTAGAATGTAGAGTAACATTACATCTCGGTTCACTTGTTTCAATTTATCAAACAG
GGAGACAGAGTAATGTTTGTTGAGATATACGATGAGGCCCTGGAACATTTGATATTTGCAGGCT
CTGATATATTTCTGTGCTCTTCCTTTTATGACCCATCGCTACAAATAGCGGTACGTAAAAACTT
TTTCTATTTCCCGCTTCTACTTAGTTAGCTAATGTTCACTTCGCAATGGCATCCAAAAACTTAG
AAGAAGTCAGTATCACATGATTTAATGGAAGGAGGTATTCTCCAGTTTTCAGAGTATGATTTAT
TGGTAGATACTCACCGAGTCAAGAGTGAATCAGCTCCTTGACACATAACCGGCGCAACTTCATT
TCCACAGACTGTGAAATGAAGCAATTGACAAGCTCTTTGACCAAAACTCCTTGCAGTTCAGATA
TAATTTTGTTCTTTGGTGGCATTTTTATTTTGCATGTCCGCTTTAGCTGTGTACTTGTGTATGC
GTTGTTGATCTTAGCAACATCATAAGTTGCCGGAATTATATTTTGATTTTTGACACATGAAAAT
GAAATTAATTCTGCAATGAAAGTTAGCTTACAAGTTGCAAGCTCACTACTTTGTCTCGTAGCAA
GTTGACTCTTATCTTTGTGGGCAGATTAGAGCAATAAAATATGGATCTGCACCAGTACAGATAA
ACTTTCCCAGTAATGGATCCAGGTGAAAACTGCAAAATATTTTATAGATGTTTGATGTGCCAAT
TGGCAATTATGTGTTGTCAAGTTTACTAAGAAGTGGCAAATATGTGTTTATGTGTACTTATGGC
ACTGTGTTTAAATTTACTTGTAACCAGGCAAACTGAGTGGCATGACTACCCTAGCACAGCCCTC
TCTCAGTACATCATCTCAACATATGGGGACATGTCCCTTTCTCAAGCTCTCGATGGCATTGTAA
GTTCACAATCTCTAGGACACTACTTAGTTAACACTTATCCTTTGGAAGCTGTTGAATCATTAGG
ACATGCCAAATCTGCAAGAAAGAAGGCTTATAGGAAGCTAAAATAGCCTCCCCGAATAAGCTAT
ATCAAATTTTTTGCTTCTTGAATGTGCAGAAGAACAACCCTTCCCAGTGGGATTGGCGTATTAA
GGATGCGATGTCAAAAGTTTTATCATGGGATGCTGAGTGCTACGACCTACATTGGGAGGCTTAT
TCCGTTATTAGGAAGCTGTGAATGATGCATTTCTCTGGGGACTGCATGGTACATCATCAGCTAT
CTAAATACAAGGCACAGTTTTTGCCCATAAACAATCCTGTAAGTCCAGTTGTTTAGCGACATGT
AATCTAGCTAAGTAAACATTCCATTCTAGTAGTATGTAAAGTACATGTTAATTTTAAATTTTGA
TTTTGTCTCTTGCTATAAAGACCTTAATCGAATGTTATTTTGCTATAGAGACAATTATGACAAC
ACCACAAGAAGAATTATGACAAAAATAAAACCAGTGCGATTGTGCGATCCACCAGTTTATTGGG
GTTATTTCACAACGTTATTGTGACTGAAAGTTCTATTCTGATAGGTTGATTTCTTGCAACTGAA
TGGACAACGGAGAGACAGCAATATTCCCTGAGTGTGTTTTGGAGAAAGCATAGTGATGATTAGT
ACCAACGCACATTCAAG
						
					

			
		

Sequences
Splice junction sequence	TTGATTTCTTGCAACTGAATGGACAACGGAGAGACAGCAATATTCCCTGAGTGTGTTTTGGAGA AAGCATAGTGATGATTAGTACCAACGCACATTCAAGggaggtattgtatactcaaataaagttt tgttaatgtcctcaaccctcccaagagatatggctatccaaggcttaggacatgggttggaagc aacattaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1001 Transcript exons: 34480774-34480883,34480997-34481162,34481247-34481327,34 481414-34481482,34481606-34481719,34482206-34482267,3448 2401-34482497,34482659-34482859,34483122-34483222 GGAGGTATTGTATACTCAAATAAAGTTTTGTTAATGTCCTCAACCCTCCCAAGAGATATGGCTA TCCAAGGCTTAGGACATGGGTTGGAAGCAACATTAACTACACACAAGGAGAAGGTGTTGGTTGC TTCTCATGGATTGGATGGTGAACTTTGGGATCCATCCAAAGACATTTATCTTCCTCAGAGGTAT TCTCCAAATGACATTGAAGGAAAATCATTTTGCAGAAAGACACTTAAGCGATGTGTTGGACTCC ACAGTGGTTCTTCCGTTGTTGTTGGGTGTATCTGCAATGGTGATTCGAATACTGATGGTCTTAG GGAAGCTGTTCGTGTTGCTCTGCATGGAGGTGCTCAGGTCATCTTCATGGAAAACAAAGGGCCT GTGATGAACTCAACTGTGCAGGCATTAAAGGAAGAACTGAAGGGAGACAGAGTAATGTTTGTTG AGATATACGATGAGGCCCTGGAACATTTGATATTTGCAGGCTCTGATATATTTCTGTGCTCTTC CTTTTATGACCCATCGCTACAAATAGCGATTAGAGCAATAAAATATGGATCTGCACCAGTACAG ATAAACTTTCCCAGTAATGGATCCAGGCAAACTGAGTGGCATGACTACCCTAGCACAGCCCTCT CTCAGTACATCATCTCAACATATGGGGACATGTCCCTTTCTCAAGCTCTCGATGGCATTAAGAA CAACCCTTCCCAGTGGGATTGGCGTATTAAGGATGCGATGTCAAAAGTTTTATCATGGGATGCT GAGTGCTACGACCTACATTGGGAGGCTTATTCCGTTATTAGGAAGCTGTGAATGATGCATTTCT CTGGGGACTGCATGGTACATCATCAGCTATCTAAATACAAGGCACAGTTTTTGCCCATAAACAA TCCTGTTGATTTCTTGCAACTGAATGGACAACGGAGAGACAGCAATATTCCCTGAGTGTGTTTT GGAGAAAGCATAGTGATGATTAGTACCAACGCACATTCAAG
Genomic sequence	GGAGGTATTGTATACTCAAATAAAGTTTTGTTAATGTCCTCAACCCTCCCAAGAGATATGGCTA TCCAAGGCTTAGGACATGGGTTGGAAGCAACATTAACTACACACAAGTAATTATCATCTTGTTT TGCTTTTTATATTTTCCTCCCTGTAGCCTGTAGGGCTAATGAATGTCCATGACTGCAGTTTCTT GTTTCACACACAAATTTTGTTTTCTCTCCAGGGAGAAGGTGTTGGTTGCTTCTCATGGATTGGA TGGTGAACTTTGGGATCCATCCAAAGACATTTATCTTCCTCAGAGGTATTCTCCAAATGACATT GAAGGAAAATCATTTTGCAGAAAGACACTTAAGCGATGTGTTGGACTCCACAGTGGTTCTTCCG TTGTTGTATGTACTTCTCATTGTCTTGCACAAAAAACATATTTTTGTTTAGTCATTACAGTGTT TCATGAAGTTTATATCGTTTGTCAGGTTGGGTGTATCTGCAATGGTGATTCGAATACTGATGGT CTTAGGGAAGCTGTTCGTGTTGCTCTGCATGGAGGTGCTCAGGTTTGTATTACTAATTATTAAT TGAGGACCTTCACTTTGGACTCAGGCTCTCTACTAGCGCAGTTTTTAGAGTTTATACTGTGTAG GTCATCTTCATGGAAAACAAAGGGCCTGTGATGAACTCAACTGTGCAGGCATTAAAGGAAGAAC TGAAGGTATCAGTATTACTGTTCCATGTCTATCATCAGTAACCTGTGTAAAGCCTTCTGTGTTC ACGGAGACTGTAGAATGTAGAGTAACATTACATCTCGGTTCACTTGTTTCAATTTATCAAACAG GGAGACAGAGTAATGTTTGTTGAGATATACGATGAGGCCCTGGAACATTTGATATTTGCAGGCT CTGATATATTTCTGTGCTCTTCCTTTTATGACCCATCGCTACAAATAGCGGTACGTAAAAACTT TTTCTATTTCCCGCTTCTACTTAGTTAGCTAATGTTCACTTCGCAATGGCATCCAAAAACTTAG AAGAAGTCAGTATCACATGATTTAATGGAAGGAGGTATTCTCCAGTTTTCAGAGTATGATTTAT TGGTAGATACTCACCGAGTCAAGAGTGAATCAGCTCCTTGACACATAACCGGCGCAACTTCATT TCCACAGACTGTGAAATGAAGCAATTGACAAGCTCTTTGACCAAAACTCCTTGCAGTTCAGATA TAATTTTGTTCTTTGGTGGCATTTTTATTTTGCATGTCCGCTTTAGCTGTGTACTTGTGTATGC GTTGTTGATCTTAGCAACATCATAAGTTGCCGGAATTATATTTTGATTTTTGACACATGAAAAT GAAATTAATTCTGCAATGAAAGTTAGCTTACAAGTTGCAAGCTCACTACTTTGTCTCGTAGCAA GTTGACTCTTATCTTTGTGGGCAGATTAGAGCAATAAAATATGGATCTGCACCAGTACAGATAA ACTTTCCCAGTAATGGATCCAGGTGAAAACTGCAAAATATTTTATAGATGTTTGATGTGCCAAT TGGCAATTATGTGTTGTCAAGTTTACTAAGAAGTGGCAAATATGTGTTTATGTGTACTTATGGC ACTGTGTTTAAATTTACTTGTAACCAGGCAAACTGAGTGGCATGACTACCCTAGCACAGCCCTC TCTCAGTACATCATCTCAACATATGGGGACATGTCCCTTTCTCAAGCTCTCGATGGCATTGTAA GTTCACAATCTCTAGGACACTACTTAGTTAACACTTATCCTTTGGAAGCTGTTGAATCATTAGG ACATGCCAAATCTGCAAGAAAGAAGGCTTATAGGAAGCTAAAATAGCCTCCCCGAATAAGCTAT ATCAAATTTTTTGCTTCTTGAATGTGCAGAAGAACAACCCTTCCCAGTGGGATTGGCGTATTAA GGATGCGATGTCAAAAGTTTTATCATGGGATGCTGAGTGCTACGACCTACATTGGGAGGCTTAT TCCGTTATTAGGAAGCTGTGAATGATGCATTTCTCTGGGGACTGCATGGTACATCATCAGCTAT CTAAATACAAGGCACAGTTTTTGCCCATAAACAATCCTGTAAGTCCAGTTGTTTAGCGACATGT AATCTAGCTAAGTAAACATTCCATTCTAGTAGTATGTAAAGTACATGTTAATTTTAAATTTTGA TTTTGTCTCTTGCTATAAAGACCTTAATCGAATGTTATTTTGCTATAGAGACAATTATGACAAC ACCACAAGAAGAATTATGACAAAAATAAAACCAGTGCGATTGTGCGATCCACCAGTTTATTGGG GTTATTTCACAACGTTATTGTGACTGAAAGTTCTATTCTGATAGGTTGATTTCTTGCAACTGAA TGGACAACGGAGAGACAGCAATATTCCCTGAGTGTGTTTTGGAGAAAGCATAGTGATGATTAGT ACCAACGCACATTCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_004400* osi_circ_012449 						
					
						PMCS
						0.101363322

Conservation Information
Conserved circRNAs	osi_circ_004400* osi_circ_012449
PMCS	0.101363322

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0807100_circ_g.1

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