Detail information of Os04g0353600_circ_g.1


General Information
CircRNA Name Os04g0353600_circ_g.1
ID in PlantcircBase osa_circ_023504
Alias NA
Organism Oryza sativa
Position chr4: 16884748-16885288  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0353600
Parent gene annotation Similar to OSIGBa0092G14.1 protein. (Os04t0353600-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATAATTGATAGAATACGATCCGATGACCATGAATGGATCTCTTTCTACTGCAAAGCAATCTT
GTCAATTTGTGGAGTCTAATGCCTTATCTCTGAATTgtatatatatatatctcttgaagattga
tatataacatcgttctcgtggggatttcaatttgttatttccttgtgtactgcctcataatcta
aagatgtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 541
Transcript exons: 16884748-16885288
GTATATATATATATCTCTTGAAGATTGATATATAACATCGTTCTCGTGGGGATTTCAATTTGTT
ATTTCCTTGTGTACTGCCTCATAATCTAAAGATGTTTGGGTTGCTGAATGAAACAAATGTGTCT
TCAATGCATAATTTTATTTCGTGATCTCATATGCTTTTCATAGCATTTAATTATTGAATGATGT
TATGAAACTATTTAATTACAATGAGGTTTAATTTATTTCCATTTCCAATGCATAGGATGTGAAA
TAATTCAGTCCCAAAGTGGTTTCATTAATTCTGTTTATAAGGCATAGTTAAATGTGTAAACCAA
GTTTCATCTAGATGAAACTCATTTATTCTATCTCGACATGTCGTAAGTTTACCCTGTATGACAT
TTCATTTAGTGAGATTAAAACCCTACAACATGACATATCTTCACATTTGTCAGAATATAATAAT
TGATAGAATACGATCCGATGACCATGAATGGATCTCTTTCTACTGCAAAGCAATCTTGTCAATT
TGTGGAGTCTAATGCCTTATCTCTGAATT

Genomic sequence GTATATATATATATCTCTTGAAGATTGATATATAACATCGTTCTCGTGGGGATTTCAATTTGTT
ATTTCCTTGTGTACTGCCTCATAATCTAAAGATGTTTGGGTTGCTGAATGAAACAAATGTGTCT
TCAATGCATAATTTTATTTCGTGATCTCATATGCTTTTCATAGCATTTAATTATTGAATGATGT
TATGAAACTATTTAATTACAATGAGGTTTAATTTATTTCCATTTCCAATGCATAGGATGTGAAA
TAATTCAGTCCCAAAGTGGTTTCATTAATTCTGTTTATAAGGCATAGTTAAATGTGTAAACCAA
GTTTCATCTAGATGAAACTCATTTATTCTATCTCGACATGTCGTAAGTTTACCCTGTATGACAT
TTCATTTAGTGAGATTAAAACCCTACAACATGACATATCTTCACATTTGTCAGAATATAATAAT
TGATAGAATACGATCCGATGACCATGAATGGATCTCTTTCTACTGCAAAGCAATCTTGTCAATT
TGTGGAGTCTAATGCCTTATCTCTGAATT
Conservation Information
Conserved circRNAs osi_circ_014266
PMCS 0.341291769
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017