Plant Circular RNA Database

Detail information of Os01g0755100_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os01g0755100_circ_g.1
					
						ID in PlantcircBase
						osa_circ_003948
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 31684555-31686971  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0755100						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os01t0755100-01);Conserved hypo
thetical protein. (Os01t0755100-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0755100_circ_g.2 Os01g0755100_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0755100-01:6
Os01t0755100-02:6

General Information
CircRNA Name	Os01g0755100_circ_g.1
ID in PlantcircBase	osa_circ_003948
Alias	NA
Organism	Oryza sativa
Position	chr1: 31684555-31686971 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0755100
Parent gene annotation	Conserved hypothetical protein. (Os01t0755100-01);Conserved hypo thetical protein. (Os01t0755100-02)
Parent gene strand	-
Alternative splicing	Os01g0755100_circ_g.2 Os01g0755100_circ_g.3
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0755100-01:6 Os01t0755100-02:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATGGAGGTGGTCAACAGCTCATGTAATGCTGGCTTGCAGAATGTTTTTGACGAAGCAATTTTA
GGCCTTTCAGATCTTGCATTAGCTTGTGTGCTTTCCatcttcaagctcctttctacaagcctca
gctttttgtacatttacatcattttctaacagcgcaggcaactctagttcagaaatttccccca
tctcacat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATCTTCAAGCTCCTTTCTACAAGCCTCAGCTTTTTGTACATTTACATCATTTTCTAACAGCGCA
GGCAACTCTAGTTCAGAAATTTCCCCCATCTCACATGATATTGCTGAAGCAATGGCATTATCCA
TGCGTGCTTTTGGAGTTCCACTTCCTGGAATCTAATAAGTGAAATCAAGAAAGTAAGGATATGA
GAACAGCTCAATACAACCTGGTTTCAATGGCAAGTCATTTCATCTTTCCATGGTCTCAAGGTGA
AGCATAACCATTGACATTGTTTTTGTTTCTGATTTAGATAACTTATAGAATGGTTGACTGCATA
ACACATCAGCCTTCATAAATTCAGTTATGGCGAAACAAAATATATGCAGTAATCAGATATATTC
ATGGCACTTACTGTTTTATTTCCCAACTCTGAAACAGTTTCTGGTGATGTTCTGCATGGTAAAA
TAAATCTATTACTTCCAAAAGAGAGAACTAGAATATTCAAGATACATTTTTATGCATTAAAATG
CAATCGAAACAACAACCTCACAGCTGGAGATTTCATGATGTGCTTCAGCATAGCAGGAGCTTTT
GGATCTGAAGCTGATTCCTGAGAAGGCAAATTAACAATATGAACAAACTACAAAAAACTAACAA
TAGCGAATTCTCCTAAAAAAATGTACATAAAAAATTGTATTCTTTTATCAATAGCTTAGTAAAT
TTGCTGCAGATAAAAACCTTGCTTAAAAACTGACTTTTGCAGGATATTTCATTTATCAAATCAG
TCCATTAAAACCCTGTGAAACTGTGCTTAAAGATGAACAAGTAAAAAACTACCACCCGTAATAT
AATCACTGACTCAAAACAGTACAACTTAAATGTTACATCTGTGGATTAATGCTTCATGCTTTTA
GGATTGGACAATTTTAACACGTCTGTTAACTTGATAGATTAGTTGATGACAGAAGTCAGTAGAT
GTCATAGAAATTTTCTATAAGGGCATGATGGATTTCTTCAGTATGACATGGAATTTCATAAATT
AGGAATTTGAGCTATTACATATGGTCTACCACTCTTACCATGAGTGGATATCGTCTTCTGCATG
TACTTTTTAACACTTGGTATATCCAGGGTGAATTTTTATGCCGTGGAAGGGCATAACATTCCTC
ACAAACTTTGATATGAAATAAGCACATACAAAGTTACAAACAACAAACTTGATATGAATTGACA
AATCAAATTTTTGAGTCTGGAAAATGTAAGCTTAAGAAAAAGTATTAGTTGTAATCCTCAGATG
AAGACAATGAGGGTTAAACCACACAGGGATACAAGCAATAGGAGAAAAAGGAAATGATTTTTTA
AAACATAATGTTGCACCAGTGAATAACCTTAGGAGTCTTTTGCATCATGGATGGGCTAGGCAAC
ACATATTTTCCTTCACCATAGGACTTTGGGTTATTGGATGTTGTTACAGGGGAACCCTTCCTCC
CGCTCGTTTCCATCATATCCTTCTCCAGAAGCAAGTCAGACTTTGAACTTATGGTGCCTGCTTT
AGTAATTCTACATTCATATAGATGATTTCAGTCACTTCTTATGCAATATGTTTAGAAAAACACA
GTTAATAGTTCAAATTCCTAATTTATGCAATATGGTAGAGATACTATACTTTGCTGCTTTCAGT
TGAGAAAGTGGTCTATTGTCAGCTTTAGGAGTGCCTTTTCCTGCATCAAAAACATTGGTACTTC
CCAAGAGTGACCGACTCGCAACGGTCTTATGTCCATTGCTATGTGCTGGGCTGCTAGGAGCATT
CAGTGTAGAAACATTGCCTGTGCTAGGAGACTCAAGTCTGGGAAAAGGAAGCTTGTTAACCATC
AATGCAGTGGAAGGATCAAGGGGATAAAATACGGTAAATATAGAGCATTCTGCTGTACTGGAAA
CAAGAAAACAAGTAGAATGGATGCAGTGCGCATGCATTCTATTCAATACACCTATTCCAAGTGC
AAACACATCCACCATGAAAACATACTAAAAGTATGTGAGGTATTTACAGTTTCCATGAAATACG
CTAACAAACACACCAAACCTTTATAGTGGGTTTCTTGTGAATTGATTTTACTCAAGTTTATACT
AGACGGGACACAAAAATTATCAAGGAACTATCATGTCCATGTTAAAATGTTAGATCAGAATTAT
GAAGAAAACATAGCAGTATTGTGCATACATTAAGTAAACACCATTATAATAAAGTTTTTGAACC
GACACATTCCTGATGTTGCAAGGTTGAAGGGCAGCAGTTTCTTACCTAAGTTTGGAATTCTTAT
GATCTTTGGCATTCATGGAGGTGGTCAACAGCTCATGTAATGCTGGCTTGCAGAATGTTTTTGA
CGAAGCAATTTTAGGCCTTTCAGATCTTGCATTAGCTTGTGTGCTTTCC
						
					

			
		

Sequences
Splice junction sequence	CATGGAGGTGGTCAACAGCTCATGTAATGCTGGCTTGCAGAATGTTTTTGACGAAGCAATTTTA GGCCTTTCAGATCTTGCATTAGCTTGTGTGCTTTCCatcttcaagctcctttctacaagcctca gctttttgtacatttacatcattttctaacagcgcaggcaactctagttcagaaatttccccca tctcacat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATCTTCAAGCTCCTTTCTACAAGCCTCAGCTTTTTGTACATTTACATCATTTTCTAACAGCGCA GGCAACTCTAGTTCAGAAATTTCCCCCATCTCACATGATATTGCTGAAGCAATGGCATTATCCA TGCGTGCTTTTGGAGTTCCACTTCCTGGAATCTAATAAGTGAAATCAAGAAAGTAAGGATATGA GAACAGCTCAATACAACCTGGTTTCAATGGCAAGTCATTTCATCTTTCCATGGTCTCAAGGTGA AGCATAACCATTGACATTGTTTTTGTTTCTGATTTAGATAACTTATAGAATGGTTGACTGCATA ACACATCAGCCTTCATAAATTCAGTTATGGCGAAACAAAATATATGCAGTAATCAGATATATTC ATGGCACTTACTGTTTTATTTCCCAACTCTGAAACAGTTTCTGGTGATGTTCTGCATGGTAAAA TAAATCTATTACTTCCAAAAGAGAGAACTAGAATATTCAAGATACATTTTTATGCATTAAAATG CAATCGAAACAACAACCTCACAGCTGGAGATTTCATGATGTGCTTCAGCATAGCAGGAGCTTTT GGATCTGAAGCTGATTCCTGAGAAGGCAAATTAACAATATGAACAAACTACAAAAAACTAACAA TAGCGAATTCTCCTAAAAAAATGTACATAAAAAATTGTATTCTTTTATCAATAGCTTAGTAAAT TTGCTGCAGATAAAAACCTTGCTTAAAAACTGACTTTTGCAGGATATTTCATTTATCAAATCAG TCCATTAAAACCCTGTGAAACTGTGCTTAAAGATGAACAAGTAAAAAACTACCACCCGTAATAT AATCACTGACTCAAAACAGTACAACTTAAATGTTACATCTGTGGATTAATGCTTCATGCTTTTA GGATTGGACAATTTTAACACGTCTGTTAACTTGATAGATTAGTTGATGACAGAAGTCAGTAGAT GTCATAGAAATTTTCTATAAGGGCATGATGGATTTCTTCAGTATGACATGGAATTTCATAAATT AGGAATTTGAGCTATTACATATGGTCTACCACTCTTACCATGAGTGGATATCGTCTTCTGCATG TACTTTTTAACACTTGGTATATCCAGGGTGAATTTTTATGCCGTGGAAGGGCATAACATTCCTC ACAAACTTTGATATGAAATAAGCACATACAAAGTTACAAACAACAAACTTGATATGAATTGACA AATCAAATTTTTGAGTCTGGAAAATGTAAGCTTAAGAAAAAGTATTAGTTGTAATCCTCAGATG AAGACAATGAGGGTTAAACCACACAGGGATACAAGCAATAGGAGAAAAAGGAAATGATTTTTTA AAACATAATGTTGCACCAGTGAATAACCTTAGGAGTCTTTTGCATCATGGATGGGCTAGGCAAC ACATATTTTCCTTCACCATAGGACTTTGGGTTATTGGATGTTGTTACAGGGGAACCCTTCCTCC CGCTCGTTTCCATCATATCCTTCTCCAGAAGCAAGTCAGACTTTGAACTTATGGTGCCTGCTTT AGTAATTCTACATTCATATAGATGATTTCAGTCACTTCTTATGCAATATGTTTAGAAAAACACA GTTAATAGTTCAAATTCCTAATTTATGCAATATGGTAGAGATACTATACTTTGCTGCTTTCAGT TGAGAAAGTGGTCTATTGTCAGCTTTAGGAGTGCCTTTTCCTGCATCAAAAACATTGGTACTTC CCAAGAGTGACCGACTCGCAACGGTCTTATGTCCATTGCTATGTGCTGGGCTGCTAGGAGCATT CAGTGTAGAAACATTGCCTGTGCTAGGAGACTCAAGTCTGGGAAAAGGAAGCTTGTTAACCATC AATGCAGTGGAAGGATCAAGGGGATAAAATACGGTAAATATAGAGCATTCTGCTGTACTGGAAA CAAGAAAACAAGTAGAATGGATGCAGTGCGCATGCATTCTATTCAATACACCTATTCCAAGTGC AAACACATCCACCATGAAAACATACTAAAAGTATGTGAGGTATTTACAGTTTCCATGAAATACG CTAACAAACACACCAAACCTTTATAGTGGGTTTCTTGTGAATTGATTTTACTCAAGTTTATACT AGACGGGACACAAAAATTATCAAGGAACTATCATGTCCATGTTAAAATGTTAGATCAGAATTAT GAAGAAAACATAGCAGTATTGTGCATACATTAAGTAAACACCATTATAATAAAGTTTTTGAACC GACACATTCCTGATGTTGCAAGGTTGAAGGGCAGCAGTTTCTTACCTAAGTTTGGAATTCTTAT GATCTTTGGCATTCATGGAGGTGGTCAACAGCTCATGTAATGCTGGCTTGCAGAATGTTTTTGA CGAAGCAATTTTAGGCCTTTCAGATCTTGCATTAGCTTGTGTGCTTTCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.104985588

Conservation Information
Conserved circRNAs	NA
PMCS	0.104985588

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							31686874-31684608(+)
31686876-31686956(-)
31684597-31686956(-)
						
						Potential amino acid sequence
						
							MEVVNSSCNAGLQNVFDEAILGLSDLALACVLSIFKLLSTSLSFLYIYIIF*(+)
MNAKDHKNSKLRLESPSTGNVSTLNAPSSPAHSNGHKTVASRSLLGSTNVFDAGKGTPKADNRP
LSQLKAAKITKAGTISSKSDLLLEKDMMETSGRKGSPVTTSNNPKSYGEGKYVLPSPSMMQKTP
KESASDPKAPAMLKHIMKSPAVRTSPETVSELGNKTIPGSGTPKARMDNAIASAISCEMGEISE
LELPALLENDVNVQKAEACRKELEDGKHTS*(-)
MYKKLRLVERSLKMESTQANARSERPKIASSKTFCKPALHELLTTSMNAKDHKNSKLRLESPST
GNVSTLNAPSSPAHSNGHKTVASRSLLGSTNVFDAGKGTPKADNRPLSQLKAAKITKAGTISSK
SDLLLEKDMMETSGRKGSPVTTSNNPKSYGEGKYVLPSPSMMQKTPKESASDPKAPAMLKHIMK
SPAVRTSPETVSELGNKTIPGSGTPKARMDNAIASAISCEMGEISELELPALLENDVNVQKAEA
CRKELEDGKHTS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	31686874-31684608(+) 31686876-31686956(-) 31684597-31686956(-)
Potential amino acid sequence	MEVVNSSCNAGLQNVFDEAILGLSDLALACVLSIFKLLSTSLSFLYIYIIF(+) MNAKDHKNSKLRLESPSTGNVSTLNAPSSPAHSNGHKTVASRSLLGSTNVFDAGKGTPKADNRP LSQLKAAKITKAGTISSKSDLLLEKDMMETSGRKGSPVTTSNNPKSYGEGKYVLPSPSMMQKTP KESASDPKAPAMLKHIMKSPAVRTSPETVSELGNKTIPGSGTPKARMDNAIASAISCEMGEISE LELPALLENDVNVQKAEACRKELEDGKHTS(-) MYKKLRLVERSLKMESTQANARSERPKIASSKTFCKPALHELLTTSMNAKDHKNSKLRLESPST GNVSTLNAPSSPAHSNGHKTVASRSLLGSTNVFDAGKGTPKADNRPLSQLKAAKITKAGTISSK SDLLLEKDMMETSGRKGSPVTTSNNPKSYGEGKYVLPSPSMMQKTPKESASDPKAPAMLKHIMK SPAVRTSPETVSELGNKTIPGSGTPKARMDNAIASAISCEMGEISELELPALLENDVNVQKAEA CRKELEDGKHTS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0755100_circ_g.1

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