Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05230_circ_g.5 |
ID in PlantcircBase | ath_circ_000788 |
Alias | At_ciR3405, Ath_circ_FC0187 |
Organism | Arabidpsis thaliana |
Position | chr1: 1516587-1517057 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ |
Parent gene | AT1G05230 |
Parent gene annotation |
AT1G05230 protein |
Parent gene strand | - |
Alternative splicing | AT1G05230_circ_g.4 |
Support reads | 2/6 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G05230.4:2 AT1G05230.10:2 AT1G05230.11:2 AT1G05230.3:2 AT1G05230.12:2 AT1G05230.7:2 AT1G05230.8:2 AT1G05230.5:2 AT1G05230.6:2 AT1G05230.1:2 AT1G05230.2:2 AT1G05230.9:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.591501445 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a |