Detail information of BGIOSGA033937_circ_g.1


General Information
CircRNA Name BGIOSGA033937_circ_g.1
ID in PlantcircBase osi_circ_009036
Alias Chr11:20235042_20239791(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 14805688-14810439  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA033937
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA033937-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTACATTTCATTACCAAACCCAGCTTCAGAGGCTTTCCCCAACACAAACCCTTGTTTGCAGA
ACTCATATGCAGGAAGCTCTCTAACTCTTGAAGCTCccttttcacatgatctttccttgaccta
cagtatgacatgaggtgtctctcatccacctctcctgtgtttgataaccggactccatattcca
gcaatctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTCACATGATCTTTCCTTGACCTACAGTATGACATGAGGTGTCTCTCATCCACCTCTCCT
GTGTTTGATAACCGGACTCCATATTCCAGCAATCTCCTCACATCTCTAGGAATGGGGCTTTGCC
ATTGGCCGTCCCACCAAGCAGGTGCCAGGAGTGGGGTCAAGGCACATTGGTGCTGTTGATGTTG
GCAGCTCAAAGGGCCAGCATATCTGTTCCAGATATGGCCCCAGCCACCCTGTGACGAGAGGCCG
TCAACCAGTAGGTTGCTGTGGACACTGCTTAAGAATGTGAAGTTTGTGCCTGAAGACTCACGAC
CTGATACAAGACAATTGCACAGTTATTTAGAATTCGGTCTTCATACTGAATTGTTCCAAACAAA
ATAGAACGGGTATGAAAGAAAGGGATATGCACCAAATCTGTTAGCTGCAGCCAATGCTGCAATG
AGTTGTGCATAGGTTGTCCCTACACGTCGGTGTGCTCCAGTGACCACTGCATATCTGGCTTGGG
AAGCCAGAAAGAAATCAACAAATGCTGCCCACCTTGGAGCTGAACCCCAGTCTCTTGAACGGAA
ATCCAAAGCCTGCAGAGGAAGGAACTTAATTTGGGCAGGAAATTGCTTCTTACAAGTGTAATAG
CAACTTGCAGAGATCTCTATTGAAAAATATTTAAAATAAGATAGGCTGAATTATGTTAACAAAA
TTGTAGAACCACTCCCATCGTTTTTATTTTTGCAATATTTAATACTCAATTAATCACGTGATAA
TGATATGTATCATTTCGTGTCCTGATTAGGTCACTTAATTAGTTAGATCAAACAAAGCCTTAGT
ATTCCTTAAAGAAAACAAAGAGAGTAATTATTAAGTCTATTTAGATGAGTAAGACACAAAGAGC
TAAATATGATTTTATGTGATAATTTTTTAATTAAAATATAGCTAATATGTGATGTACTCGTAAT
ATTTTTTAATATAGAAATTCAGATACCTCCTTTTCTTTTATATAGTAGGTTCATATATGTACTT
GGAAACATATATCTTCCCAATCGTAAGTACATTATGCTCTTATTCTTTTTTTGTTAAGCAGTAT
ACGTACGTACACGGTAATTTATTTTCCCGGTAATAGAACGTACATGTTTTTCTCCGGTGAATAG
TTGTACATACACGGGAGACTTGTCTTTTTCTTCAGTTCTTTTTATTGTGGCAGATTATCTAAGA
TAATGGGTCCACAAATTTAAATGAAAATCAACGATACACATAGATCTGATCTAATGGTTTAAAT
TAATGGGTCCACCAATTTAAGTGAAAATCAATGGTGAGATTAAACAGTGCCACATGGCGGTTTG
GGAGTGTTTATAGAAGCGCCACATGGCGGCTCAGGAGCGTTTGTAGGAAGTTTAATGGACTTTT
AGTATATAATAGATCTAACACCCGGGAAGATACTTCTCACATTTTCAGTAAACAGCACTGAGAA
ACTGTGGCAAACATAGTGATGGATCTTTCAAGAGAGTATATTGTACCTTTTCACTTCCAGTTAT
CTCTAGATCAAAACTCCTGGAGAACTTTTTGTGATCAAAATAAATCACCTGCTTAAAAAGTAGA
TCATAACCATCAATTCCCCTTCCTTTTAGAAATTCCAAGCTAATTAACTACGAAAACTATCTAA
TCATAACCCATTACATTTGAATAAAACTATGAAGTCCTTGAGATAACATTCGACAAAGTAACTA
ACCTCAGCAAACTCACTGATGTCTTGCTTTATATCCTTGGCAAAGCCTGGTGTATCTGAAATTA
CTGCTACCCGAGGTGTACCCTTCAAATGACAAATCTCTATAGCTCTCTTAATACAATTAACTGC
AGCTTTTCTTGCTCGAACTGGCCTAGTCAAAAAATGAGTTATGTTCAGCAGTTCAACCCAGATG
ACGTGGAAAGGTCGCTAATAAATTTGATCTGCATAATCGTAATTTGTAGGTGGTGGAGGTTCTC
ATATCGATAAGGTGCAAAAAACGTCAAATCAGACATTACCATTTGCATTAGTTTATTGAAATTT
CTGAAACATTTATAATCAATCCTGCTTGTAAACATATAGAAGAGAAATGTTAAAAAATTATTAA
TTAGACAACAGGAAAGAAACGAAAAAAATAAGAGGTTGACAGGCCAGTTTGCTGAACTATAATG
AATCACACTATCTATTAATCATACAAATCTTTACTGATTCAAGTGGGATTTTGACGTTATGATG
TAACATATGCTTTCAGCTAACTAGTAATTACTGTATCAAAATGGAATTTAATTGCTTTTACAAA
CAAATGCAATGTCAAACAGATCCTTATGTTTCAGTTGACAACTGCACCAAGAGTTTCTGTTCAC
ATCTACAGGTGGAAGCAGCATATTTCAAGGCTAACTGATGAACCAGTTATTTTTTGACGTGAAG
TTTACAACGTCAAATTTGACAATATCCTATTATGTTTTCAAATGAATGTGGAAATTTACATCTA
TTTCCTTCCTTTATGCCACAGATAGTGCTTCATACCTGTTTGTCATCATGCGCATGTGCAATAC
AATATCAGGACTGGAACCCTTTAAAGCCCATTGAACTGCCTTTTCAACTGTCTGTGAAGGAGAT
ATTATAACTTGCATAAGTTCACCAAATGTATTAGGTCTCGCACGTAATGAGCCAGGGGATCCAA
AGAGTGACGAAGCAGCTGTTTTCATTCTAGCATGAACATTCTTCAGAAAGAATTGGATCCCAAC
TGCATCTGTTGTACCATCAAACCTAGCATCATTAACAAGTAAAACTATGTCAGCATGCGTTGGT
TTTTACATTTAGTTTTGGTAAGGAAATTAACTGTTAAGACAAAGATGTGAAGAAATTCCCAGCT
AACATAACCAGAAAACAATTCAAGTGCATGACTTTCTATCCCACAGCTAATTAATAAAAAAGTT
CAGGGGTTTTAGGAGGCTGTTTATGTCAGATGTACTAGTAGTAATGGTCAAGCATCATTTATTT
CTTCCAATTAGTACTTGGCTGTTATTTCCTTCTCGAAACATGGATGGTTTGGAACATCAATCGT
TACATTTGGTTTTAATATGGATCCTCAATCTTTCTATATTTATACAGCTCACTTGTTTTCTTAT
ATCAAAAAGAATTGCAAAGATGACTTGTAGATGGCAATATTTTAACAGGAGATTGCAGACAGAT
AAGTACATCATGTTTTTATACAGTCCTTTTATTTTTATTTCAAGATAGTAAGTTTGCTCATAGC
ATGGTTACGCTCCAGTATCTAACTTTTTATGTAGAAAGTGGAAAAAGAAATTAAAACATAATAT
GGGGTAGCACAGTAGCAGTAGGCCAGTAAGAACCCACAGCGTGCATGCATAGTGCTTCCAAAGT
ATCTGTTTACAAAACATTTGCAAAAGGTCATGCTTGCACGTGTGAGTTACTGCATACTGAATAT
GAGCTATAGTTATTTAAAACTAGAACAGTATTTGTATACAAAACAGTATTACATTGTTGCCAAA
AAAATGGAAACCACTAACTTTGGTAACTCCATATGTCTATAAGGCCTGCAAATGATGTGTCTAA
TGAAAAGAAACAAGATTCATCCGAAGTATCTAGTGCGCTGTGGTGTCCATATACAAAAGGTGAG
AATAATCAACTTCAATAACTTGGTTGGAAATGAACATCTGGGTATTTAATATATTCAGAGTTCA
GACTTCAGATATTCTACAGAATATCATTTTCTTCATTTTGTTCTTACAAAAGAATCTTGATGTG
GATAAAAACAAACATAAATGCATGCAATGTGCCAGACATAGAATGCAATCTCAGTCAAGGGCAT
ATAAGCACATGGTGAAATAATACAAAAAGTGAAATAGTATCTACATTAATATGGGGGATAATCA
AGACCTTTAAGTCTAGCTAAATATATTACTTATCATGATTTGCACAAAAAAAATTGACAGGGCA
TGTCATTTAGTCATATCTGAAAGGGACAAATGCAGACACATCATGAACATATCAATGTTATGTC
AAGAAAACTAACTGTGAAAATGTGACTTTACTAGATTGTAACTTTTAGACTATAGTACTAACCA
GATGATTGGATCTTTCCAGCTATTCCAGTCACTGCAAAGTACATTAGTCTCTGTTGGGTGTTCA
AAATTGTCGACTCTCATACTCAGATTTCTACCATATGTTCTAGCACAGCGATTTTTCCTCCATA
AATGCTTGACTTCTCCAATAGTGAATGAATGATTGGTGTAAGAAATGTACTCTCCAAAAGGATA
TAACCCCCTGTTGGATAAACCGATAAAGGAACAAACAAAAGGTAAGATGGTAGTGAATATCAAT
CATCAATACTCTAAATTTCTAATTGTTGCCATAACAATATTTTACAGATTCAAGATGGATTGAT
ATTGTGCCTACTTTATCACATGTATAGATGGAGTGACCAACTAGAAAATTAAATTTGATATGTA
TTACAGTAATATCTCATATATAATCATCACAGGAAAGTCAAAATATAGGTCCAACGTATTCAAA
CCCGATAGATAAGGAAGATAAATAATTGAGAGTAAATGCACATGCCTGGTTTGCCCGATGATGA
GAGACCGGTTTAACATAACACTCAATGCTGCTGCTGTTAATATCTTGTACATTTCATTACCAAA
CCCAGCTTCAGAGGCTTTCCCCAACACAAACCCTTGTTTGCAGAACTCATATGCAGGAAGCTCT
CTAACTCTTGAAGCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR1428e-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021