Detail information of Os07g0190000_circ_g.1


General Information
CircRNA Name Os07g0190000_circ_g.1
ID in PlantcircBase osa_circ_033080
Alias NA
Organism Oryza sativa
Position chr7: 4821743-4821975  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circseq_cup
Parent gene Os07g0190000
Parent gene annotation Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor.
(Os07t0190000-01)
Parent gene strand +
Alternative splicing Os07g0190000_circ_g.2 Os07g0190000_circ_g.3 Os07g0190000_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   AC-CC
Number of exons covered Os07t0190000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGACACGCCGGAGGACAAGATCATCTGGGACGTCGGGCACCAGGCGTACCCGCACAAGATCCTG
ACGGGGCGGCGTTCGCGGATGCACACCATCCGGCAGtctcgacgccggagctggagcagctggc
ggcggagctccgggcggagatcgtgcacacggtgtccaagaccgggggccacctgagctccagc
ctgggcgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 233
Transcript exons: 4821743-4821975
TCTCGACGCCGGAGCTGGAGCAGCTGGCGGCGGAGCTCCGGGCGGAGATCGTGCACACGGTGTC
CAAGACCGGGGGCCACCTGAGCTCCAGCCTGGGCGTCGTCGAGCTCGCCGTGGCGCTGCACCAC
GTGTTCGACACGCCGGAGGACAAGATCATCTGGGACGTCGGGCACCAGGCGTACCCGCACAAGA
TCCTGACGGGGCGGCGTTCGCGGATGCACACCATCCGGCAG

Genomic sequence TCTCGACGCCGGAGCTGGAGCAGCTGGCGGCGGAGCTCCGGGCGGAGATCGTGCACACGGTGTC
CAAGACCGGGGGCCACCTGAGCTCCAGCCTGGGCGTCGTCGAGCTCGCCGTGGCGCTGCACCAC
GTGTTCGACACGCCGGAGGACAAGATCATCTGGGACGTCGGGCACCAGGCGTACCCGCACAAGA
TCCTGACGGGGCGGCGTTCGCGGATGCACACCATCCGGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.300068348
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016