Detail information of BGIOSGA034174_circ_g.1


General Information
CircRNA Name BGIOSGA034174_circ_g.1
ID in PlantcircBase osi_circ_009490
Alias Chr11:9468006_9470622(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 7686615-7689232  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA034174
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034174_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA034174-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTCTCATCAGCGAGAGTATCATTTCCAAGTTTAAGAGTACGGTTGATAACTTGTAGAGCCTC
CCAGTATCGGTGAAGCAAAGCTAATGTTTGGCAAAGcctggctgttgtcacaaagacgcagata
tcgaaagaggaatgccaaagcttgaacgatgcactggttcttattctgaagcctaaagccaagg
gctaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGCTGTTGTCACAAAGACGCAGATATCGAAAGAGGAATGCCAAAGCTTGAACGATGCACTG
GTTCTTATTCTGAAGCCTAAAGCCAAGGGCTAAATTAATTAGAGCAGATCCTGCAAATGATTGA
ACAGCTACAGTTAGTACTCTTATATGTTGATACGTGTTAATGTTAATACTTAATGCCATTGTTT
TGGTGGCATACCAACACAGAGATTTATAAATGGATTTTCTGGGTTCAATTTATAAGCTTCCAGA
TAATCACGAGCAGCTGACTGATGCTGGCTGATAGCCGTAAATCGATGGCCAGATATGATTATAG
GAGGAACACAGTCAGTCTTTTCTTCTCTTATCCGTAGAAGAAATTTATGATGACGTGAGAACCT
ATCTTCTATTCTGCAAAGAAAATGTGAAATTAGAACAAGTGAACAGCTGCTTTTGATTTCAAAA
TTTTCATGGTGCAACTCGATATATACAGACTATATTGTTTGAGTATTATCAGAGAGTAGTACAA
CGGAAACTGGAAACTGAGGAGCCTAGCAGGGCAAGAGCAATGTCATACAACACCAGAAGGGCTA
TTGGGGAAGTCCTAGTGGATATTGCATATAAAAAAAATAAAAATGTGTTGAACAAAAGCATGTT
CTAACGAAAGTGGAGATTAAAGCACTACCTGTTTTTTTTTTTTTTGAAAGCAGGGATTGGAAAA
CTAGGACTGACCAACAATCAGCATTTTAACAAGCCAGGTGAGAGGTTTCAAATTCGGAGTTGAT
TAGGATTCAACTGAATATGCTAGGTATACCATTTTCAAATACTCTGTCAAAACATGAAGAATTG
ACAACACAACTCAGCCCTTTTTCATGGTGTTTATGCCAAAAAGTGCAAAAAGGCAAAAACCAAT
CAGCCAGCTCTAGGATACCTTCACCCAATTCACAGCTGGGTTTTGTGGCTACATAAGATTGTTC
AACACTGTTTATCACTATAATCTAACTGAAACGAAATTACTAATGCTGGCAAAAAAAAAAGTAA
AAGGTCTTTCAACCGGACAAAAAGGAACCAAAGGCCTATGCCCCACAAATTGTATACAACATGC
AAAATACAGAACATATGTAGTGTGACCAGTATAAATAAATGCAAAAAAAAAAATCAATCATAAT
CATTCCAACTAATAAATGCAAAAATTCAATCATAATCATTCCAACTATTACCTTGATGTCACCT
TGTAGTATGAGTTCCATGCAGCAAGGGAATATGGATGCTGCTGAACTACATTTCCAACTAATAA
ATGCAAAAATTCAATCATAATCATTCCAACTATTACCTTGATGTCACCTTGTAGTATGAGTTCC
ATGCAGCAAGGGAATATGGATGCTGCTGAACTACATAGCGGACATAATTAAAGCCATGTCTAGG
GTCTGGAGCTCTATAAGCTATTTCTGCAAAATTGCAAGAACAATAATATCAAGTCAAACGAACT
GTCATAAATATTACCAAATAACCTGTCTCGATTTTCATAATATAATAAGAAATCGATGAAGTGT
CAGTGCGTGCTACTCAATCACTCATTAAGAGTGTCAACAAAATGACACTAATATAGTTGCAATT
GGCAACCAGATTCACTCATACAATATCACCCTGGTCTCATTCTTTACCATTTCCTGCCCCAGCA
GCACCTCTCCATTGGGCCTACCCGCCACTCCTAGGTACAGCCAGAACATAGCACTTACGGCAGA
AGGCATGGGAATTCCAATGTGGAGAACTTCAAGACCAGCTCTGTGTCCCACATCAGTTAACTTT
TATTATGAGGTGTGAGGTCATTCTGATGGTTGCAAATCACATAATTGAATGGAAGTTCCTAGTT
GCAATAGTTGCTTGTTTGGTTTTCCCACACTGCCAAATTCTATATGTTTTTCTCTAGCTGTTTG
GTTAATTGCCACAATTCTGACGTGATGGTCTTTTTGCCCTAGAGCCCCCTTTCATACACCTGTA
TGCCTAAGGTGTGGCCAGCAATTAGTTTTATTTACCAAACCTTTTTTTTAGAACATGCAGGAGA
TCTGCGATTAACCAAACCTTTGACAACATGTGAAAGGGAAAAAAAATTAGGAAGGTTCAAACCC
ATCACTTCTTGACATCCGTATGGATGGATGGTGAGCTTACATCAACTGGGCTACTGCACTTAGA
TGATTAGAAAGGGAGTTAACTTTTTTCAGAACAGAGCAAAGGATTTGATTCTTTTACTGGACCT
TTATCTGGGTGAGCCAATCTGTCACATTTCCCAGACTGAAGCAAACCATGTTAATAGACAGTTT
GGCCCAATCTGACCAGTGGAAAGGATGATCATCACATGGGGAAAAAAGAGGTTAATCATTTGAA
ATGAGAATAATGGAAATGTTGGATCAAAAACTGAAATCTATAGTATGTCGTCAGTTACAATGAA
CTAACTGCATGTAGCATTTTATCAATTGAATAATACATAGAGCTGGGAATAGATCTTACGAGCA
CCCAAGGATCTGAGCTCCTCTTTGTTCTCATCAGCGAGAGTATCATTTCCAAGTTTAAGAGTAC
GGTTGATAACTTGTAGAGCCTCCCAGTATCGGTGAAGCAAAGCTAATGTTTGGCAAAG
Conservation Information
Conserved circRNAs osa_circ_009036 zma_circ_001641
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021