Detail information of BGIOSGA016460_circ_igg.2


General Information
CircRNA Name BGIOSGA016460_circ_igg.2
ID in PlantcircBase osi_circ_014391
Alias Chr04:22242462_22254214(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19856026-19860397  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016460_circ_igg.1 BGIOSGA016460_circ_igg.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCCCTATAACTAAGCAGTGGGTTTCGGCAACGAAGAGCATCGTGGAACAAGAGTGGAGCTCA
CATTTGGAGTCTCTCCAAGCTTTGCCAGCAGATCATacgcggtccgcgcctcaccccttgctga
cgtcagcatagcctttttccttgtaaaaataaataataattgcgcaataaatcgagtttaattc
tagaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACGCGGTCCGCGCCTCACCCCTTGCTGACGTCAGCATAGCCTTTTTCCTTGTAAAAATAAATAA
TAATTGCGCAATAAATCGAGTTTAATTCTAGAAATTCATTTAAATGGCTCAAAACTTCTAAAAT
TCATATCTAATTCATTCGAACTCCGAATTGAGCCATTCAACTTGCAAAATTCATCTAAAATTGA
GCTCTACATGTTTGTTTAGTTTTTATGTACTGTTTCCTTGGTTTTTATTAGAGTTTTACCTCGT
TTTGCGTGCCAGCGTGTAGTTTCCGTTGTTTCGGAAGATCGCGGTCGCGAGGAAAAGAGTTCGG
AAGATCAAAGTGAAGAAGCAAGGCAAGTCACACATTCCCCTTGAGCATGTTGATCCTAATTTAC
AAATGTTTTACTGTTTGCAAATAAATATGCATGTTTTGCTAATTACACGGGATCAGGGTTTACC
TATCTGCTCGCTTGTGCCATGTTTACTTGATATCTATCCTTTGTCAACATTGGGTAATAAATCG
ACTAGCTCATGTTACTTATGTGACTTAGCTAGAACTATATGCTTAGCCATGCTTAATTACCACT
AGCTCAGTTGATGGGATAATTACAGTTTTAGACCTTTCTAGTATCTTGTTGAGCTGCGTGCTCG
AGACTTCTGGCCATGCTTCATGGTCATGATTATCCAACTAAAATGCGACTGCATGGTGGGCTGT
GGGTGCATGGTTTTGCTAGTCGCACCCATGGCAATTAAGGACCGGTTCGCGGGATGCCCTGGAA
GAACTTATCGTACTTACCACAAGCCAGCGTGGGCAACGGCTGGGCTTGTAGTGTAGCTTTTCTC
TAGCCGACGTACCCAGGCGAGGGTGGGCGTGATGGAGTTGGGTCGGCCGAGGTGTCCGGTTGAT
CGGCTTCCGGATTCACCGCGGCACGAAAGGGGGGCTGCCCGTTGCCTGCTGGGGACGGGGGCGA
ACCCTAAGGTGTGGTGCGATCGGTTAGAGGGGGTTATGCGAAGGGTCCTGTCACGGCCTCTTTC
CGGTATGTCGTGGTGGCATGTCGGCGCACGGAAACGTGTCGTGGGGCTGTGTCTTGTGGGTACA
GTTGTACACCTCTGATCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTATGGGCGGTCAA
CCAGATTCACCGTGATTAGTCCCATCTTAATAAATCGACAATACACTGTAGTCCAGGTGGGTTG
GTTGGGCCTGTTCAACGTGGTGTAGCGTTGATCAGTGGAGGTTCAATATTACTTTAATTACCCA
ACAGTTTTACTGTTTTGCTCAATAAAATGTTTTACAACTGCCTTTATGCAAATAGCCACAAACC
CCTCCTTGTATCCCCTTGCACGTCTGCATCGTTGGTGTGGCTTGCTGAGTACGGTGGTTGTACT
CAGTCTTGCTATTATTCCCCCTTTTCAGAAGTGTAGTGTTTCTGAGCTGAAGACGAAGTTAGAA
GACCAAGGCTCAGACCCCAGTTGAGTTTTGCCTGTGGAGTGGAGCTGAAGCCCCGCTAGGATCG
CCTTTTTCCGCTGCTGCTGCTTTCGTTTCGGTGCGAGGACTAAGTGCCTCTTTTGTAAGTATTT
TACGCTTTATTTACGTTTGGAACTGTTTATTACTTGTCGTTTTGTGTACCCTGGTTGGTCCTGG
ACAGGGATTTAATACACAAAATAGTCTGGAAATTTGGGCTAAATTTCTGGGCGTGACAGTAACG
GCCGGAGTGCATGCACGCAGAAATTAAAAAAAAGAAGAAGGGAACAGTAATTTATTTTTCTCTT
TTAATCTAACTATTCATAATCAACTAATGGATATCCAATGAGAAGAGGGAGTACATACACTGTA
TATAAAAAATATAGATATATTTAATTTTTTATATGTATACATTTTTAGTGAATAAAAAATATAT
AAACGTATATAAACTTTGTAAACGTACATATACAAACTTTACATATGTATTAAAAACCAATAAA
AAAACTACAAACTATGTAAATGTGTGAGATACTACGTACCTATACAATCTTTGTAGATGCACAT
ATTAAAAAATAGTAAAAAAGGAGAGAAAAAACCCAAAAAAAAGCGTACGTACACACGTATTAAA
AAACCGAAAAAAGAGAAAAAAACAAAAATACCGAGAGGAAACCGAGAAAAGAAAAAAAAAACCC
GGAAAAATAGGGCCTCCCCGCGTCCTCCATCTCCGTCTCGGACCCCCCTCCTCGCCGTCCGATC
CGCCTTGGGATTCCCAATCCGTTTCCGAATACTCCCCCCACACCCGCTGTGTATATATTGCCAC
CTCAAACGACAGAGGAAAGCGTAACACAACAAACCCAACTTCTTCTCTCTCGAGGGAGAGAGAG
AAAAACCAAGAAGAAGTCGAGGAGAGGAGAGGAACAGTAAAGCAGCGAAGGAAGCGAGTTTGCT
TGCGCGCGCGCGAGATTCGTCGCCACCATCGTCGTCTCGTCGATCGGCGCGCGAGGGAGGGAGA
GATGGCGGTGGCGGCGATGGAGCTACCGGCGGTCCGAGCCTACGACGCCCTGGGGATCAACGAG
ACGTCCGTCAAATCCATGCCGTTCGAAAACCTGGCCACGCTGATGCAGTCTCCGGCGACGCTCC
AGGCCACCAAGGCGGTGCTCGACCGGTTCGAGAAACTCTTGCCTCTTCTTTCATCGCCGGTCAT
AAACATCGATCACCTCCTGAAACACCTTGGATCTCCAAAGAAGAAGAAGACACCACCACCTGCT
GCTGCTGCTAGCGCGTCTCGATACTCGCTGAGGGTAGTCCTCTGCTCCTACATGATCCTGGCTC
ATCCGGGTGCAGTGTTGAGTGGACAAGGGGAGAAGGAGAAGCTACTTATGGATTCAGCAGGAAG
CTTTGTCAAGGAGTTTGAGCTATTGGTTAAGACTGTGCTTGAGAAGCAATCGACTGATGCTGCT
GCCGGTCAGAAAATGTTCAGTGCTCAGCTGGCCGATTTCGATAGAGCATGGTGCGCTTACCTCT
ACTGCTTTGTGGTGTGGAAACTGAAGGATGCGAAATCGCTGGAGGACGATCTTGTCCGGGCTGC
GTGCAAGCTTGAGCGGTCGATGATGCAGACGTGCAAGCTAAGTTCAGATGGGCAGTCACATAAT
GGCCTCTCTCATGATATGAAGGCGATTCAGAAACAGGTTGCTGATGATCAGAAGCTGTTACGAG
AGAAGGTTCATCAACTGAGTGGCGATGCAGGCATCGAGCGGATGAACTCTGCTCTTTCGGACAC
AAGGTCAAAGTTCTTTGAGGCGAAGGAGAACGGAAACCCATTAGCTGCATCAGTTGCAAACGTA
TCTACTCCTTTGAGCATTGGTTCGTCTGGATCGAGCTTCACTGCCCAATCTTTGCCTGGAGCTG
CTTCATCGTCAAGCAGTTCATCTCTGATGAAACAGCCGACGGACAATGAGCAAATGCTCAATGA
GATGCTTCACGAGGACGATGTTTCTTTTGGTGGCAACTCTGATAACGTCAGTTCCGCGGAGGAG
TTTCAGGCCAAAGTGAAATCGACGATGGAGAAAGCGTTTTGGGATCTGGTTACTGATTCGATGA
AAGGGGACAAACCAGATTATACCCAACTAATTAACCTCGTGAAGGAAGTCAGGGATTCATTACA
TGAGTTGGCTTCCAAGGAGTTGAAGGAGGAAATCCTCGAGAACATTGACCTCGAAATTTTGTCA
CAGGTAAGGAATCGGTGGTCTTGACAAAATAAAATAGTTAGTATTAATTTGCTTTTGCTAAACC
CAGTATATTTTGAATTAATGTTGTTATTTTTTTTTGGATGAAAGGTGCTCGAGTCAGGCTCCCA
GGACACGCGATATCTGGGGCAGATTATGCACTACTCCCTGGATATGATCAGGAAACTATCTGCC
CCTGCAAAGGAAGATGACATGAAGAAGAGTCATGAGAAATTATTGAACGAGTTGGCTGCAAGTT
CCGAAGTTAATGACAATGGCATCAGCTCCTTTGTCATTGCTGTCATCAAGGGCCTGCGTTTCAC
TCTCGAAGAAATAAAGGTTTGTTCAATGTTAACACCTTGACTTAGTCCTGACATAGATTGCACT
TACTTTGCGCCGTGTTTTCCTAACATTTTTTCTGTGATTTAACAGCAACTGCAATCTGAAGTTA
GCAAGGCTCGCATCCAGCTCATGCAACCAATCATAAAAGGCTCTGCCGGAGTGGAGTACCTGCA
GAAGGCTTTCGCGGATCGCTATGGACCTCCTGCTAATGCATCAGCGTCTCTCCCTATAACTAAG
CAGTGGGTTTCGGCAACGAAGAGCATCGTGGAACAAGAGTGGAGCTCACATTTGGAGTCTCTCC
AAGCTTTGCCAGCAGATCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021