Detail information of BGIOSGA013429_circ_igg.1


General Information
CircRNA Name BGIOSGA013429_circ_igg.1
ID in PlantcircBase osi_circ_013494
Alias Chr03:31595234_31595862(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 32826783-32827411  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTGGTTTTGAATGTATAGGTACCTTGCTGAGTTTAAGTCAGGAGCTGAGAGGAAGGAAGCA
GCTGAGAACACTCTTGTGGCATACAAGTCTGCCCAGggtgcacaaggtcagactaagtttgcgt
tgaagaacaaaggagaggaaaaatgtcgcctgctgaggcatcgcgtgaggagaatgtgtacatg
gcaaagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGCACAAGGTCAGACTAAGTTTGCGTTGAAGAACAAAGGAGAGGAAAAATGTCGCCTGCTGA
GGCATCGCGTGAGGAGAATGTGTACATGGCAAAGCTTGCCGAGCAGGCTGAGCGTTACGAGGAA
ATGGTCGAATTCATGGAGAAGGTGGCAAAGACCACTGATGTTGGTGAGCTCACCGTTGAGGAGC
GGAACCTGCTTTCTGTGGCTTACAAGAACGTGATTGGTGCTCGGAGGGCATCGTGGAGGATCAT
CTCTTCTATTGAGCAGAAGGAGGAGAGCCGTGGGAATGAGGCATATGTTGCATCAATTAAGGAG
TACCGTAGCAGGATTGAAACTGAGCTCAGCAAGATCTGTGATGGTATCCTTAAGCTTCTGGATT
CCCACCTTGTCCCATCTGCCACTGCTGCAGAGTCCAAGGTGTTCTACCTGAAAATGAAGGGTGA
CTACCACAGGTATTGATTTCTGGTGTTTCAGGAATTAGCAGTAGCTAACAGTTTACCTTTTTTG
TGTTTCCTAAGGTTTATTTTCTGGTTTTGAATGTATAGGTACCTTGCTGAGTTTAAGTCAGGAG
CTGAGAGGAAGGAAGCAGCTGAGAACACTCTTGTGGCATACAAGTCTGCCCAG
Conservation Information
Conserved circRNAs osa_circ_021207
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR167e-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021