Plant Circular RNA Database

Detail information of AT2G23760_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT2G23760_circ_g.2
					
						ID in PlantcircBase
						ath_circ_014578
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 10109402-10111012  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							AT2G23760						
					
						Parent gene annotation
						
							BEL1-like homeodomain 4
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G23760_circ_g.1 AT2G23760_circ_g.3 						
					
						Support reads
						20
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G23760.4:2
AT2G23760.2:2
AT2G23760.3:2
AT2G23760.1:2

General Information
CircRNA Name	AT2G23760_circ_g.2
ID in PlantcircBase	ath_circ_014578
Alias	NA
Organism	Arabidpsis thaliana
Position	chr2: 10109402-10111012 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	PcircRNA_finder
Parent gene	AT2G23760
Parent gene annotation	BEL1-like homeodomain 4
Parent gene strand	-
Alternative splicing	AT2G23760_circ_g.1 AT2G23760_circ_g.3
Support reads	20
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G23760.4:2 AT2G23760.2:2 AT2G23760.3:2 AT2G23760.1:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATGTCGTGTACGGAACCGCCGCGCCGTAACCCATTACTTGGTCGAATGAGTTCACTACCATTTG
CATTTGTTCGCAGTAGTGGTTGTACCGTCGGTCCACctgatttctggataaaccagtctgtcgt
gctaagaggtgcttatcagcatcgcttgggtacctgagaaagagaccagaaaatgacttcacaa
tctttaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGATTTCTGGATAAACCAGTCTGTCGTGCTAAGAGGTGCTTATCAGCATCGCTTGGGTACCTG
AGAAAGAGACCAGAAAATGACTTCACAATCTTTAGAACCCTAAACCAATAATTTTTTTCTTTTC
TCTTTTTTTGAATATAGATAGAGAGGAAAAACACAATCAAGTAGATGCAAGAAAAGGTACAAAC
TTTCTCCTTACAAGGGCGTGAGAATCTAAGGGACAAAAGAAAAAGCTGATTTCAGAATAGAAGC
ATTTTATTTTATTTTTGTATCTTAACTTATTTTTCATCATAAAGCAAAATATTTATCTGTACAA
CTCTTCTCTTCTTTACTTCACTAACAACAAAATAGTAAAATTCTGCAGACATTAAATAGAGAAA
GTACTGATGAATAATGACAGAAGAAATTGCTTTTTTCAGCTTTTAGATTTTTTTTTTCCTCTTT
TTGATTTCTGTCTTTCTTAAGGGACAATATACCAATGAAACTGTACCACTGACAAATCTGAGAC
TTATTTTTTTGTAGTTATGTTAATGGCATTGTTACTTCTTTTGATAATAGTATGTGGAATGAAT
TAAAGCAAATTAAAGAAAAAAAAACTATAAAGGAAAGGTTAGGCAGAGACAGAGAAACCCTTAG
GATGCTATTATGATCCCAAAGCATAAAAGTTTGCGATCTCACTCTGCAAACTTCTTTTGTTGCA
TTAATTATTTAAACCCTTTAATTTGCCATGCAATATAACCTACATTAATATAAATATAAACATA
CAGTTTTCATGAAAGTCTCCTAGTCAATGAATTGTTACCCTTGTTATTTTGGAGTACTCTTAGC
TGACCATTCTTATGGGTGGTATGAAAAGGAAAAAATATTTGATATTTAAATTTTTATTAGTAGT
AATAAACATAAAATAATCAAACTCAGTGAAGAAACGGAACTTCATTTTACAAAAATTATTTTGG
TTTTCTAAAAAAGCCAGCAGCTTTTAATTTTGATTGAAATAGAAATATATCTTCCCGCATAACA
AAAGAGTTATAAAAAAAAAAATTTTTTTGTCACTTTCATAACTTAAGTTTAATAAACGTATATT
AGTTAAAGTCTTGGTATCAATGCATTATGGTAGTCTACATTTTATAATGTATAGTCAACATTCA
AGAAGATTAGTATTATCGAAGAATAAGAGTAGGTAAGTATTATTAAGGGATTAGAAAATGGACT
TACGGATTAAGAAAATGCTCGAATAGCCAAGCTCTAAGGATATTAACGGAGCGTTCAGGCAAAC
CACGTTGCGGTCTCCATGCCTCTTGCTCCATCATACCCATATGATGAAACGCTCGTTGCTGACG
CAAACTCTGCTCTAGCAAACGCAATCGCGGCGTTTCCCCTTTGGTTAACCCCGAGGATGCAGCC
CCTGCCGCCTCTTTATCCCCTAGAAGCTCACAGCTGCGTTTAAGCTGAACCGCTACCGCGTCTT
TCAAACACCGGAAATGCCTAGACATTGCCTTTTGAGCTAATGTCGTGTACGGAACCGCCGCGCC
GTAACCCATTACTTGGTCGAATGAGTTCACTACCATTTGCATTTGTTCGCAGTAGTGGTTGTAC
CGTCGGTCCAC
						
					

			
		

Sequences
Splice junction sequence	ATGTCGTGTACGGAACCGCCGCGCCGTAACCCATTACTTGGTCGAATGAGTTCACTACCATTTG CATTTGTTCGCAGTAGTGGTTGTACCGTCGGTCCACctgatttctggataaaccagtctgtcgt gctaagaggtgcttatcagcatcgcttgggtacctgagaaagagaccagaaaatgacttcacaa tctttaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGATTTCTGGATAAACCAGTCTGTCGTGCTAAGAGGTGCTTATCAGCATCGCTTGGGTACCTG AGAAAGAGACCAGAAAATGACTTCACAATCTTTAGAACCCTAAACCAATAATTTTTTTCTTTTC TCTTTTTTTGAATATAGATAGAGAGGAAAAACACAATCAAGTAGATGCAAGAAAAGGTACAAAC TTTCTCCTTACAAGGGCGTGAGAATCTAAGGGACAAAAGAAAAAGCTGATTTCAGAATAGAAGC ATTTTATTTTATTTTTGTATCTTAACTTATTTTTCATCATAAAGCAAAATATTTATCTGTACAA CTCTTCTCTTCTTTACTTCACTAACAACAAAATAGTAAAATTCTGCAGACATTAAATAGAGAAA GTACTGATGAATAATGACAGAAGAAATTGCTTTTTTCAGCTTTTAGATTTTTTTTTTCCTCTTT TTGATTTCTGTCTTTCTTAAGGGACAATATACCAATGAAACTGTACCACTGACAAATCTGAGAC TTATTTTTTTGTAGTTATGTTAATGGCATTGTTACTTCTTTTGATAATAGTATGTGGAATGAAT TAAAGCAAATTAAAGAAAAAAAAACTATAAAGGAAAGGTTAGGCAGAGACAGAGAAACCCTTAG GATGCTATTATGATCCCAAAGCATAAAAGTTTGCGATCTCACTCTGCAAACTTCTTTTGTTGCA TTAATTATTTAAACCCTTTAATTTGCCATGCAATATAACCTACATTAATATAAATATAAACATA CAGTTTTCATGAAAGTCTCCTAGTCAATGAATTGTTACCCTTGTTATTTTGGAGTACTCTTAGC TGACCATTCTTATGGGTGGTATGAAAAGGAAAAAATATTTGATATTTAAATTTTTATTAGTAGT AATAAACATAAAATAATCAAACTCAGTGAAGAAACGGAACTTCATTTTACAAAAATTATTTTGG TTTTCTAAAAAAGCCAGCAGCTTTTAATTTTGATTGAAATAGAAATATATCTTCCCGCATAACA AAAGAGTTATAAAAAAAAAAATTTTTTTGTCACTTTCATAACTTAAGTTTAATAAACGTATATT AGTTAAAGTCTTGGTATCAATGCATTATGGTAGTCTACATTTTATAATGTATAGTCAACATTCA AGAAGATTAGTATTATCGAAGAATAAGAGTAGGTAAGTATTATTAAGGGATTAGAAAATGGACT TACGGATTAAGAAAATGCTCGAATAGCCAAGCTCTAAGGATATTAACGGAGCGTTCAGGCAAAC CACGTTGCGGTCTCCATGCCTCTTGCTCCATCATACCCATATGATGAAACGCTCGTTGCTGACG CAAACTCTGCTCTAGCAAACGCAATCGCGGCGTTTCCCCTTTGGTTAACCCCGAGGATGCAGCC CCTGCCGCCTCTTTATCCCCTAGAAGCTCACAGCTGCGTTTAAGCTGAACCGCTACCGCGTCTT TCAAACACCGGAAATGCCTAGACATTGCCTTTTGAGCTAATGTCGTGTACGGAACCGCCGCGCC GTAACCCATTACTTGGTCGAATGAGTTCACTACCATTTGCATTTGTTCGCAGTAGTGGTTGTAC CGTCGGTCCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.265037686

Conservation Information
Conserved circRNAs	NA
PMCS	0.265037686

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							10110980-10109404(-)
						
						Potential amino acid sequence
						
							MQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAASSGLT
KGETPRLRLLEQSLRQQRAFHHMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPSDADKH
LLARQTGLSRNQVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAV
QLKRSCELLGDKEAAGAASSGLTKGETPRLRLLEQSLRQQRAFHHMGMMEQEAWRPQRGLPERS
VNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVDRRYNHYCEQMQMVVNSFDQVMGYGAAV
PYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAASSGLTKGETPRLRLLEQSLRQQR
AFHHMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVDRRYN
HYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAA
SSGLTKGETPRLRLLEQSLRQQRAFHHMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPS
DADKHLLARQTGLSRNQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	10110980-10109404(-)
Potential amino acid sequence	MQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAASSGLT KGETPRLRLLEQSLRQQRAFHHMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPSDADKH LLARQTGLSRNQVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAV QLKRSCELLGDKEAAGAASSGLTKGETPRLRLLEQSLRQQRAFHHMGMMEQEAWRPQRGLPERS VNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVDRRYNHYCEQMQMVVNSFDQVMGYGAAV PYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAASSGLTKGETPRLRLLEQSLRQQR AFHHMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPSDADKHLLARQTGLSRNQVDRRYN HYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAA SSGLTKGETPRLRLLEQSLRQQRAFHHMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLNPYPS DADKHLLARQTGLSRNQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT2G23760_circ_g.2

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