Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d014037_circ_g.1 |
ID in PlantcircBase | zma_circ_008435 |
Alias | zma_circ_0002058 |
Organism | Zea mays |
Position | chr5: 30101829-30107301 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d014037 |
Parent gene annotation |
Serine/threonine protein phosphatase 2A regulatory subunit B''al pha |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d014037_T011:6 Zm00001d014037_T004:6 Zm00001d014037_T013:6 Zm00001d014037_T008:6 Zm00001d014037_T009:6 Zm00001d014037_T017:3 Zm00001d014037_T003:6 Zm00001d014037_T015:6 Zm00001d014037_T007:5 Zm00001d014037_T012:6 Zm00001d014037_T002:6 Zm00001d014037_T014:5 Zm00001d014037_T010:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.069054358 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30107204-30107300(-) |
Potential amino acid sequence |
MFPAGSAPPLSPRSTSGSPRVMRRGSGAGPSSLGSPLKLVSEPVREVIPQFYFKNGRPPTKDLK EQCLSRTDHLFFGGEGLQIQEFRSVTKDICRLPSFFSSALFKKIDVACTGTVSRDAFVEYWMDD NKITMDMASQIFEILRKPGCTYLTQDDFKPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIF YSINRSGNGHLTLRELKRGNLIAALQQLDEEEDINKVLR*(-) |
Sponge-miRNAs | zma-miR169l-3p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |