Detail information of Zm00001d014037_circ_g.1


General Information
CircRNA Name Zm00001d014037_circ_g.1
ID in PlantcircBase zma_circ_008435
Alias zma_circ_0002058
Organism Zea mays
Position chr5: 30101829-30107301  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d014037
Parent gene annotation Serine/threonine protein phosphatase 2A regulatory subunit B''al
pha
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d014037_T011:6
Zm00001d014037_T004:6
Zm00001d014037_T013:6
Zm00001d014037_T008:6
Zm00001d014037_T009:6
Zm00001d014037_T017:3
Zm00001d014037_T003:6
Zm00001d014037_T015:6
Zm00001d014037_T007:5
Zm00001d014037_T012:6
Zm00001d014037_T002:6
Zm00001d014037_T014:5
Zm00001d014037_T010:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGATGGTAGAGAACTACTTGAAGCAGCATTTGTGCTAGTAGAGCTTCCAGCAACATTAAGCAC
AGCACCAGTCTTTGCATCCTCAATCAAAGACTTTACctcaacactttgttgatatcttcttcct
catctaactgctgaagtgcagcaattaaatttccacgtttgagctctctgagagtcagatggcc
attcccag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 827
Transcript exons: 30101829-30101970,30103220-30103310,30103444-30103585,30
106676-30106775,30106854-30106956,30107053-30107301
CTCAACACTTTGTTGATATCTTCTTCCTCATCTAACTGCTGAAGTGCAGCAATTAAATTTCCAC
GTTTGAGCTCTCTGAGAGTCAGATGGCCATTCCCAGATCTATTTATGGAGTAAAAGATTCTGTA
TATTACAGTCTCCGCATATCTCTCCTGAAACTCGGGGGTCCCTTGTAAAAACTCTAAGCCAGGG
TGAGTTGCAAGTAGTTCTTTCAGGACAGGCTTGAAGTCATCCTGAGTGAGATATGTGCAACCTG
GTTTTCTTAAAATTTCAAATATTTGACTAGCCATATCCATTGTAATCTTATTGTCATCCATCCA
GTACTCAACAAATGCATCCCTGTGGTTAGATAGAGTTAGACTACCATACTTAAATCTCGAGACA
GTTCCAGTGCATGCAACATCGATTTTCTTGAAAAGGGCACTAGAGAAGAATGAAGGAAGTCTAC
ATATGTCCTTTGTGACCGATCTGAATTCTTGAATCTGAAGTCCCTCCCCACCAAAAAATAGGTG
ATCTGTTCTTGATAAGCACTGCTCCTTCAGATCTTTTGTAGGAGGACGCCCATTCTTGAAGTAA
AACTGAGGTATAACTTCTCTCACTGGTTCACTAACTAATTTTAATGGAGAACCCAAGGACGATG
GTCCAGCTCCAGATCCTCGTCTCATAACACGGGGAGAACCAGAAGTGCTCCTAGGAGAAAGTGG
TGGAGCACTACCAGCAGGAAACATCGATGGTAGAGAACTACTTGAAGCAGCATTTGTGCTAGTA
GAGCTTCCAGCAACATTAAGCACAGCACCAGTCTTTGCATCCTCAATCAAAGACTTTAC

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.069054358
Functional Information
Coding potential Y
Potential coding position 30107204-30107300(-)
Potential amino acid sequence MFPAGSAPPLSPRSTSGSPRVMRRGSGAGPSSLGSPLKLVSEPVREVIPQFYFKNGRPPTKDLK
EQCLSRTDHLFFGGEGLQIQEFRSVTKDICRLPSFFSSALFKKIDVACTGTVSRDAFVEYWMDD
NKITMDMASQIFEILRKPGCTYLTQDDFKPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIF
YSINRSGNGHLTLRELKRGNLIAALQQLDEEEDINKVLR*(-)
Sponge-miRNAs zma-miR169l-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b