Detail information of Zm00001d028915_circ_g.1


General Information
CircRNA Name Zm00001d028915_circ_g.1
ID in PlantcircBase zma_circ_000610
Alias circ139
Organism Zea mays
Position chr1: 51077849-51078263  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d028915
Parent gene annotation Chloroplast protein HCF243
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d028915_T006:3
Zm00001d028915_T004:3
Zm00001d028915_T003:3
Zm00001d028915_T007:3
Zm00001d028915_T008:3
Zm00001d028915_T001:3
Zm00001d028915_T002:3
Zm00001d028915_T005:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACAGTGCAAAAATTCTGGTCTTAAGGTTGCCGTTGCATCCAGTGCCGACAGGATTAAGGTGGA
TGCCAATCTGGCTGCTGCTGGTTTGTCCGTGTTTCTggtgaggccaatttccttggaggtgtcg
caagagctaaaggagtgaaagatttcaatcctgaaagtgccaagaagagattttttgagatata
tcttgaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAGGCCAATTTCCTTGGAGGTGTCGCAAGAGCTAAAGGAGTGAAAGATTTCAATCCTGAAA
GTGCCAAGAAGAGATTTTTTGAGATATATCTTGACAAGGTTAGATTACTAAGGCAACAGCTTGT
ATCAGTTGTTGATTAGAATATGATGACATCATGGTCAAGAGCTCTGTTTCGATCTGTAGTACGC
AAAGCCAAATTCTGGCATCGGATTCCCTGGGGCTCTGGAGCTCATCTTGGAGGTATGTGCACCG
AAATTTGTTTAAATAGATTTGAACCTATTAACGTTAAAATGCACTATGTGCTTTGTCTACACAG
TGCAAAAATTCTGGTCTTAAGGTTGCCGTTGCATCCAGTGCCGACAGGATTAAGGTGGATGCCA
ATCTGGCTGCTGCTGGTTTGTCCGTGTTTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.05544004
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b