Detail information of BGIOSGA001884_circ_g.1


General Information
CircRNA Name BGIOSGA001884_circ_g.1
ID in PlantcircBase osi_circ_008944
Alias Chr01:10227819_10228644(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10961310-10962135  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA001884
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTATTATTGCTACAGTGTCAGGTTATTCTACCAATTATCCTCAAGAGACCAAGCTATCAGCAT
GCACACACAAAAAAAAGCCACAAGAGATAATTCGGTcattttactaacaaggagacataaataa
ggcagcatataacttgcactcaggaaaggaaaggttatcaaccagatcgacacctaacatgcaa
gaatcact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTTACTAACAAGGAGACATAAATAAGGCAGCATATAACTTGCACTCAGGAAAGGAAAGGTT
ATCAACCAGATCGACACCTAACATGCAAGAATCACTACTTCCATATTAAACTAAATGAAAAACT
CATACGCAGCAACAGTGTAGTTCATCATTCACAACATCTTTGCAAACCTTTTAAAGTAATATCA
TGCTTTACCTATAACCAAAGAAAACTTTATTCTCTAGATTAACTAGCTTCAGAGTACTATAGAA
ATATCAAGATAATTTGATGTAAACTTTCATGTTCAAATAAGACTTCCAGTTCACAACAGAATGG
CAGCAAAAAGGATTAGACAATGAACAAAAACAAAACAGGGCCGCACTGTAATGAGGATGTCAAA
ACTTGCTTAAGACATGTTGAGTGACATATTAGTGGGAAAAAAATTGTGTGTTTCCCAGACCTTT
GATCTTATGACTCATGTCAGTAATTAGGCTCCAGGAAACAAAGAAATATCAAGACAATGTTTAC
AAATTTAGGTACTCAGGACTCAGGAGACACTAAAAGTAACACTAAGGATTCCACACTTGAGCTT
GCTTGCATAGCAGTGAACATTCTATTAACCCTACACAAGACATGATGTGCTTCATAATGTTGAT
AAAATGCAACAAGTGCATTTTTGCATTATTAAATTTGCAGTGTGAAATAACTCATCGATTCATG
TTTGAGTGAACCTGTTGTCAAAGTTATTATTGCTACAGTGTCAGGTTATTCTACCAATTATCCT
CAAGAGACCAAGCTATCAGCATGCACACACAAAAAAAAGCCACAAGAGATAATTCGGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021