Detail information of Csa3G016940_circ_g.1


General Information
CircRNA Name Csa3G016940_circ_g.1
ID in PlantcircBase csa_circ_001363
Alias Chr3:1504815_1508045
Organism Cucumis sativus
Position chrChr3: 1504815-1508045  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa3G016940
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa3G016940_circ_g.2
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa3G016940.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGCTCTGTTTTGGTAATAGGTTGCAAGCGTGGATTCATTTCAAGGAAGGGAAAAAGATTAT
ATCATATTGTCATGTGTGAGGAGCAATGAACATCAGgtatttgctgtcaaaagtgttcttcaga
agccaataagcttgattcagggacctccgggcactggaaaaactgtaacttctgctgccattgt
gtatcata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATTTGCTGTCAAAAGTGTTCTTCAGAAGCCAATAAGCTTGATTCAGGGACCTCCGGGCACTG
GAAAAACTGTAACTTCTGCTGCCATTGTGTATCATATGGCCAAACAAGGCCAAGGGCAGGTTTC
ACTTCAAATACATTTTTCTAGTTCGCTTGTTAATTTTCATATTCAGCTTTCAGATTGTGAATGT
AAGATGTTCATCCACTCCGCAGGTACTGGTCTGTGCCCCTAGTAATGTGGCTGTGGATCAGCTG
GCAGAGAAGATAAGTGCAACTGGATTGAAGGTAAGGAATTAGTATTTACTAGTTCCTCCTTGGT
TTCCACATTGCCTCTTATGTTTGTCAGATGTATCATGTAACAGTTAGTTTCTTAAGTTTATCGT
TTGGTATGTCTAGTATGACTTTTTGTTGCAACTGTCTATTTGAGGCTATTGGAAGTATCATTCA
CAATTTCATAACTGCTTTCTGAATCAAGGTTGTTAGGCTATGTGCAAAATCAAGGGAAGCTGTA
AGTTCTCCTGTGGAACACTTAACCCTTCATTATCAGGTATTTGATCATTGTAACTTGGGTCCTC
ATCTGCACTGAGTCTGTGACTGTGCTCATTTTCATGTTTTATTGTCAAGTCTGATGGATTGATC
TATTAATAGGTTCGACATCTTGACACATCGGAAAGAAGTGAACTTCATAAGCTGCAACAATTGA
AAGATGAGCAAGGTCTGATTTGCTTTTTCTAACTAATATTCTTATTAGGACATTCTTCATTTTC
TGATTTCTCTGAAATAGTCTATAAGTAGAAATATTGTCTGTGTAAGAAAATGATTGGAGTATGT
GGATTAGTCTTGGAGCCCAATGAAATATCAAATAGTTGCATGTCTTTTTAGGCTTCAGTACCTC
TCACCTGCTTTTCCATTTCACGAAACAGGTGCATAGTTGTGAATTCCTTTTTGACAAGTTGATA
TTCTTGGGACTGGACTCAAGTGTTCTTTTTCATTGTGCTCTACCTAAGTTGACAGTGAACAAAG
GGATTCCGGAAATTTGGGATTTTATTAGATTTAGTTCTTTTAAGGGTGTCTGTTAATAGGGTGT
TTTATTCTTATCTGCTTAATATTCTTGTGGATTGTGACCCATTTTTGTAATTGGGTGAGGACTG
GTTGTTTTTTGGGCTTCTTTTATGGTATGCCTTTGTATGTCCTTTCATCTTTTCATTGAAAAGG
TTGGTTTCTTATATAAAGCAATGGGATTTTGAAAATTACTTGTCGGTGAGAGATTGAAAAGAGG
CTTCGAAAGAAGTTGTACATTGAATGTTAGCGCTTCCTGTCTACTTATCGCAATGAATATTATT
GTTCCTTGGTGTATTTCTTGGTGAGCAGCTGTATTGGTTGGTGTGTTGACATTATTTCTCTTGT
TTCATTTAAGATTCAGATGCTAGTTTGCTGTTTAATAATGCATACTCATTGTTTAACCAAACAG
GGGAGTTGTCCAGCAGTGATGAGAAAAAATATAAGGCCCTTAAGAGAGCAACAGAGAGGGAAAT
TTCACAGAGTGCAGATGTTATTTGCTGCACATGTGTTGGTGCCGGAGACCCACGCTTGTCAAAT
TTTAGATTTCGTCAGGTTAGAGCAATATTGGCTGTTGTCATACTGATATGAAATAGCAAATAAC
TTATAAACTTAAAGATTCTATCTTGGTTTAGGTTCTTATTGATGAGTCTACTCAGGCCACGGAA
CCTGAATGTCTCATTCCTCTTGTTCTTGGAGCAAAGCAGGCACGTGGAGTTTTCAATTCGCATT
GTCGTCTATTTAAATTGTGCTTCTTTTCTCATACTGATTTTTTTCTTGTTTTAGGCTGTTCTTG
TTGGTGACCATTGCCAACTGGGACCTGTCATTATGTGTAAAAAAGCGGCACGTGCAGGGCTGGC
TCAATCCCTCTTTGAGCGTCTTGTTCTTCTTGGTGTGAAGCCAATTAGATTGCAGGTATTACAA
ATGGTTTTTACTTGCATATGATTCAAGGGATGTATGAGAATAGTTTCACCACGTAAATTTATCC
TACTTTGACATTTGTAATTTAAGCCTTAGAATCCAACAATCATTACATTTTTTATATCTTGTTT
TATTTATGCTATCAAAATAGTAATGAACATCCAATTGTCTTAGAATATGCTGATGTTATGTTTT
TTCTCTTTTATTGTAGGTTCAATATCGTATGCACCCATCGCTTTCTGAATTTCCTTCTAACAGC
TTCTATGAGGGCACACTACAAAATGGAGTTACCATCAACGAAAGGCAATCAACAGGCATTGACT
TCCCATGGCCTGTTCCCAACCGTCCAATGTTCTTCTATGTTCAGGTATTTGTCTTTGGTTTTGT
TAATAAGAGAGCAAAGGGACTGTCAAACTGTGGGGGGTGGGTCATAGTCTAGGAGCTACAAAAC
AATGTACAATCATAAACAATAGGAAAAATGAGTAATTAAAAGATCACAATTGATACTTTTGAAA
GGAGGCCATGGCCCCATGGTCTGAGTTTGGAGATGTACACATCCTTCTAAAACCTGAGTTGTAT
GTATGTTCTAACTTGAATTGTCCAGAGTTTGTAAACTTTTAAATGCATATTCTGTTGTTTAAGA
AAAGCAAAAAAGAAAAAAAACAGGTGAAAGAATTCTTCAGTTTTTACATAGCATATGATCAGCT
AACTTGCCTTTTGTCTGGTGTTTCTAAGTTGTATTTGTCTTTAGTTGTGTTTGCATTCATGTTC
TGAACTTTCACATCAAATATTTATAGATGGGACAAGAGGAGATAAGTGCCAGTGGAACTTCCTA
CCTAAATAGGACTGAGGCAGCAAATGTAGAAAAAATTGTGACCACTTTTTTAAGGAGTGGCGTA
GTCCCTAGTCAGGTATATTGGTTGTAGTCTTCCGGCAATAGGAATGATACTTTCCCTCAATTTT
TTTATGTCATTAACCTGATTGCTACAGATTGGAGTTATCACACCGTATGAGGGGCAAAGAGCTT
ACATCGTTAACTATATGTCAAGAAATGGTGCTCTCAGACAGCAACTTTACAAAGAAATTGAGGT
AATTTTGCTCATAAAGTGTTCATCAATATCCTTGTTTTGTTTGTTGTTACTAGCTGCAATTCAG
CTCTGTTTTGGTAATAGGTTGCAAGCGTGGATTCATTTCAAGGAAGGGAAAAAGATTATATCAT
ATTGTCATGTGTGAGGAGCAATGAACATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.120967502
Functional Information
Coding potential Y
Potential coding position 1504915-1508042(+)
Potential amino acid sequence MAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSE
RSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVL
IDESTQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRL
QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQV
LVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQ
LKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATE
PECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPS
LSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAA
NVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKD
YIILSCVRSNEHQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA
VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGELS
SSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVL
GAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSF
YEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTF
LRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRS
NEHQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS
ATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGELSSSDEKKYKA
LKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQAVLVG
DHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGV
TINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQ
IGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQ
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhu et al., 2019