Detail information of BGIOSGA000663_circ_ig.26


General Information
CircRNA Name BGIOSGA000663_circ_ig.26
ID in PlantcircBase osi_circ_010819
Alias Chr01:34757419_34796053(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 37016064-37021001  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA000663_circ_igg.1 BGIOSGA000663_circ_igg.2 BGIOSGA000663_circ_igg.3 BGIOSGA000663_circ_ag.1 BGIOSGA000663_circ_ig.1 BGIOSGA000663_circ_ig.2 BGIOSGA000663_circ_ig.3 BGIOSGA000663_circ_ig.4 BGIOSGA000663_circ_ig.5 BGIOSGA000663_circ_ig.6 BGIOSGA000663_circ_ig.7 BGIOSGA000663_circ_ig.8 BGIOSGA000663_circ_ig.9 BGIOSGA000663_circ_ig.10 BGIOSGA000663_circ_ig.11 BGIOSGA000663_circ_ig.12 BGIOSGA000663_circ_ig.13 BGIOSGA000663_circ_ig.14 BGIOSGA000663_circ_ig.15 BGIOSGA000663_circ_ig.16 BGIOSGA000663_circ_ig.17 BGIOSGA000663_circ_ig.18 BGIOSGA000663_circ_ig.19 BGIOSGA000663_circ_ig.20 BGIOSGA000663_circ_ig.21 BGIOSGA000663_circ_ig.22 BGIOSGA000663_circ_ig.23 BGIOSGA000663_circ_ig.24 BGIOSGA000663_circ_ig.25 BGIOSGA000663_circ_ig.27 BGIOSGA000663_circ_ig.28 BGIOSGA000663_circ_ig.29 BGIOSGA000663_circ_ig.30
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TC-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCCTCCTATGGTTTTCGTTACCGAGATATCTTTTCTTTTTCCCAGGGATTTTTTGGGTAATC
AGCTCCCATGCTGCAAACAGTCAAATCTGAACCTTGacttagtttggctagattcgaatgcctt
ttcgaatttaatacgacatctcttgatacctttcactcctattggtcagacagatccgggctta
tcaagtgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTTAGTTTGGCTAGATTCGAATGCCTTTTCGAATTTAATACGACATCTCTTGATACCTTTCAC
TCCTATTGGTCAGACAGATCCGGGCTTATCAAGTGGTACTGAAATAGGGTAAAATTCAGTTTAG
TAGAAAAGAAGGAAGCAAGTGAAGAAAGATGGGATCAAATTGTGAATGTTCTTGGTTCGCATCT
TGCTTTTTGGGCGTGGTTTCGCAATGGAGCTAGAAAGATTGGTCAACTACTTCTTAAACCCAAG
CAAGCTACTTTGACTACTTTACCTAGCCCAAGCCAGACTTCAAACTTACTTTCTCTATTTAGCT
CTTAAGCCTTTTTCTACCGACCGAACATGAAGAAGCTCACGGAAGAAGTAAGTCATTACGGTTG
GCAGGGATTGACTTTCCGTTGAAGTATTTTCTTACCTGTTGTATAGAAGTCTTCGTTTCAGTCC
TCCTAGTGGCCATTGCTCCTAGTATGAGTAGTTGTGATGGGCTGCGAGTTCCCGGGGTGACGAG
CCTTTAGCATCCAGATTGGGCAATACGAGATAGATTGATTTACTTCGAGGATAGTCTTTCTTTT
CCAAGCGAGAAAGTGCAAGTGTTTCTATTTTCACAAGTGAAGATATTGAAAAGCATATCCGAAA
GCAAAGAAATATTACCTGGGCGTTGTACGCCCTTCTTGTTTTTGAATCACGGAAATGCGGAGGT
TTTAATTAGTGCTTACCTGCAGTCCACCCTTTCTTTGAACCTTGTCAATGATCGAATTTACAGA
TATGAACTGAGTGCCATTTGATGAGTAAGATCGAACAAGGGAGAGGGATATGGAAAGGATGAAG
TAATGAAAGAGGAAGTCATTGCTAGTAGTAACGACTTGTCACGATCCATTGGTTCATATAGAAT
CCATGTCCTAGGTCTATCAAAAAACATTCTTTTCACTAAGCGTATATAATAAAATAGAGTGAAA
GGGTCCACCCCGAAACCAAGGGGGTACTAACTAACAGCTGAGTCCTCTCCGAACCGCAGGAGAT
AGTTGCCCATCATACGGCTCACCAACTTCACTTGCCTCTAAGGGGGGCTCGCTCCGGGCGGGTT
CGGATCACTTACTATACACGGCCCTACGAAGGGGTTAGGAGCGTTTTCAAGATGATTCTTTCTT
TGTCGAGACGAAAAAGGTCTTTTCGATTTCAAAATGTGAGTCTGTTTTGCCCACTTTATCCATC
CCCCTCTATCAAAATGATCAAAAAGGCATTTAAAATGCTTCTTATTCCCGTGTTTGATCTTATC
CATCTCTGCCCCGCTTCCATGTGGGCAGAGACCCCTGTAGAGAATGAAGAGGAGCCAAGGATCT
TACTCTCAAGAGTGCTTCGATAGGCTCCACTCTCTCCCCTGAATAAGTCAGGCTCCGTTAGCCT
GGGCTGAGATGGGGATAACGAGTCGACGATTGAAGCCCCCAACGTTCTGCCAGACACTGGACAG
GGGTAAGCTCTGTAAATGTGTAGAGCCAAGTGTAGTGTGGTGTAGTAGTAGGCACTTCTAGGCC
CCTTCCCGGCTACTGGATCACTCCAGTGCTTCGGGTACTACGGACCCTCTGCCATCCATTGCAG
CAGAGCCGTTTCATGAGCGGGGGGGCTAAGCGCAGTTCTTTGAATCAAAGGTTTTATGAAATCG
AAATCGATTCTTTTTTAGATATCTGGATAGATGGATGGATCTATCTTGATATTCAGATATCTTT
TGCAATCAGCCCCAAATCCTTGATTTGGCCAGGAAACAAAGCACTGCTTTGGGCCCAGGAAGCG
AAGGGAATGAGCTCGGCTGCTTCTCCTCCACACTTCTTTATTTCTCCGTGCCCCTTCCGCATGC
GCTTCGCGCGCCATTGGCGCTTTGCTCTCCTCTTATTTCTTCATTGGAGGGTTCGGATGGACTT
CGCCGTTCTTTCCCAACGAAAATGGAAAGGGCTGTATCACATCGAGATGTCGATTCGTTTTCCG
CCCCAAATGAGATGGGGAATTAGTCACCTCTGTCCCTTCATCTTTATGAAAGGAATCAAGGCCC
GGCCCGGCTCGCGTCGTTCCAACAACCGACGGGGAGCACCTCAGTATACGATCGCGCGCAGTAA
CTGGGAGTCCTATTACACCTAAGGCCAACTTCCATTCACCAAACCCAGGTTCATCTCGTGTAGT
GATTGTGGACTCGTACAAGGATATGGAGTCGACGGTTGATGTATCAGACTCGACCCTGTCTTTC
GTAGCATGCATTCCCATCTGTGTTGCAACTGATTCGGTAAGCTACGTGTCCGGTGCACGGAAAA
CTGCCTTCGGTCTCCCAACCTTACTCATGGCAACCTTCCGGCCGCCCAACAACCTATAACGCTA
GTCACTACTCCCACTGGGGCTAGGAAGTAAGCCCCACAACCCAAAGCGGCGAAGAACAAATAGA
ATTTGCTACAAAAGCCGGCTAACGGGGGTATTCCTGCGTATGAGAACATTGTAATGGAGAAGGT
CATAGCCAAAATAGGATTCGTTTTGGCTAGAGCGCCCAAATCCGCTATATATTTGACACGGGTT
TGCCGTAATGCTGGAACTATGGCGAATGCATCTATCGTCATTGATGCATAAATAAATATACCAA
TTAGTAGTGATTGAATTCCTTCTATGGTTCCACATGAGAAACCAGTACGAATATAACCTACATG
TCCAATCGAACTATGAGCTAGAGGTCTTTTGACTTTCGTTTGGGCCATGGCGGCCAGTGCTCCT
AAGATCATAGAAGCAATGCTGCAGAAAAAGAAGATTTGTTGTAATGTACCCCCATAGGAAGCAA
CAATAGAAACACGTGACATATTTGCAGAAATAGAGATTTTAGGCGCAATAGAAAGGAATGCTGT
CACCGGGGTGGGTGAACCCTCATAGATATCAGGTGCCCACATATATAGAGTCAAAAGAGAGATT
GAGTCCGAGGGAGAGGGGGGTTTTCTTGGGGCTCGAGAGATTGAATAGATAGGGCCCCACAAGT
TGTTAATTCGCCGCTGGGGAATTCACACAAAAGGGAAGGACTTATTCTCAACGAAAAAAGTGCT
CTCTGAACCGAACATGAAAGTTGTTTTCCATCAGACGGCTGTTCACGTAACTCCACTCTCGGCT
TGGATTATATATCCATTTGGTCCGCTCCCGGCCATTCCACACGCTGCCTAGCAGAGACGTGGTT
ATCTGAAGTGGATTCTCTCTTTTGTAGTAGATGCCGAACCTGCTGCTCAGTGGGCGGGCGCAGC
AGCTACATGGACCCCTTTCTTTATGTTGTTGCCAGCGCTTTCCCGGGCCGAGCCGGAATTCTTT
ATTAGAACGTCGGCAGGCAAAGCCCGAAGGAAGGCAGCTATCCCCTCGGCCTTCTTCCTTTTCG
ATGAAAAACAAATCGACATCTCAATCTCCGAAAGCGTTTTCCTTACCCGGAAAATCCCCCCCCC
CCTTCGTCGAGCCTTTCCTTTAGTGGTAAGGGATATGCACTTTATCTGAACGTCGGCAGGCATT
CCGGAATTCTCCTTTTTGGGCCCCGGGTGAACATAGGCTCAAACATGATTGGAGGGGTCCTAGC
TACGCCATGCGTTCAATACAAAAAAAAGCCTCTGGGAAGCTGCAGGGATTACAAAAAGAGGGTG
CTTTCCTGTGTTGCACTGAAAAAAGGACAAAGGAGAAGACGCTCTTCGACTTTCTTTCTTCCTC
CCGCGCCCGCCTAAGCCCGGCCCGGCCCGCGTTAGAGGGGAAGATTAGCAAAGCGGAAAAAGAC
AGAGGGAGGGGGAGCTGCATCTTATTCTCTTCGCGAGAACTTCAGGATCGGAGAAGCATTCGGA
AGGGGCGAGGCCTTCATTTCGTTGGCAGAAGCAGAAACGATCCAATCCATTCGGGGCTTCGGGG
AACCCAAAAACGAACTCTGTTTACTTTTTTCATAGATAGATGATATATATAGGAATAATATATA
CATCCCTTTACTTTAGATGTCTATGTATCTATTTTTTAATCATCTCCCGATTATCTTTTTTTTT
CTAGTTCGCACTGCTCTTTCTCTCTAAATTGCATCAAAGAAAATAGAGAGAGAGCAGATGGATC
CTATCCCCTATAACGAACACTCATTTCTATCTATTGATAGAAAAGAAAGATCTTCGTCACGGAC
TTTGCCTTTGTTCTATTTTTTTTAGATTTGAGGAATTCCTCATATCCAAGGCAGCTCCCCACAA
ACACCCCACCCATACGACTATGCCCTCTTTTGAATCGACAGTAGATTGGGCTTCATAGCTACTT
TCATTCTAAAGACGAATATTAGTCAATAGGCAGGCTTCTTTCAGTAGCAAACATATTCATTTTC
ACCGGGCTCCGCGCACCTTTGGTACTTCAGGAGGGCAAGCTGTTTTATAGTGACTTCTTTCTTA
GGGTAGGGCGACGAATACTTCAAATTCCGGAAAGGGGTCGCGAAGCTAAAGCGAAAGTTGTAGA
AAGCCGGGAGAAAAAGCGAAAGCTTGCTCGAAACGGCCTATACCCTAACCCTCGGAAGCGAAGA
CGCAAAGCGTCACTTTTCAAAAGGAAGGAGTGAGGCTGACTGAATCCATCCATAAAACCGTCAA
GGAAACGAAGTTCGTTCCCTTTCATCAAGTGGGTAAGGTAGGCGAACCACTTAAGCTTTGCCTT
AGACTGACGGAACAAAGCTAAGAAGTAGGCTGAATGGAAAAAGGAAAGGGACAAGGGCGGTCGT
CGCTTGGCGCGAAGGCTGCTGGTTCGGTACGGTACTAAAGGTCCTCGGACTTCCAGGCGGTTTT
TCTTTTGGGCTGCTGGGAACCCTTGGATCTCGCCAATACAGCCTCCTATGGTTTTCGTTACCGA
GATATCTTTTCTTTTTCCCAGGGATTTTTTGGGTAATCAGCTCCCATGCTGCAAACAGTCAAAT
CTGAACCTTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021