Detail information of Zm00001d035937_circ_g.1


General Information
CircRNA Name Zm00001d035937_circ_g.1
ID in PlantcircBase zma_circ_002229
Alias circ54
Organism Zea mays
Position chr6: 61320711-61321037  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method KNIFE
Parent gene Zm00001d035937
Parent gene annotation Chaperonin 60 subunit beta 2 chloroplastic
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d035937_T003:2
Zm00001d035937_T001:2
Zm00001d035937_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAATGGTTAATTACTCCGACAACTTACCTTGGTTGCATTTAGGGCATCCTCAACTCTTAACTT
CTTCTCTTTTAGTTCAGTTTCTGTTTGTGCTCCCACccttctgctcatcgttctccagtgtatc
cttgatggcatcgactttagctgcaagccgcaaaagggtgcatcctccaccaacaacaatacct
tcctcaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCTGCTCATCGTTCTCCAGTGTATCCTTGATGGCATCGACTTTAGCTGCAAGCCGCAAAAG
GGTGCATCCTCCACCAACAACAATACCTTCCTCAACAGCAGCCTATAAAGAAAAAGGAGCAATT
TTAGCGATATATAACCAAAATAAAGTTGAACTAGAACAAACCTATATGTTCTGATCAAAGGAAG
TATTCCTCATGAAGCAAATATAAATCTGGCAGCACAAAATGGTTAATTACTCCGACAACTTACC
TTGGTTGCATTTAGGGCATCCTCAACTCTTAACTTCTTCTCTTTTAGTTCAGTTTCTGTTTGTG
CTCCCAC
Conservation Information
Conserved circRNAs osi_circ_016927 osa_circ_029404
PMCS 0.01911315
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b