Detail information of AT2G17670_circ_g.1


General Information
CircRNA Name AT2G17670_circ_g.1
ID in PlantcircBase ath_circ_013615
Alias NA
Organism Arabidpsis thaliana
Position chr2: 7675465-7675521  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G17670
Parent gene annotation Pentatricopeptide repeat-containing protein At2g17670
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues aerial
Exon boundary   No-No
Splicing signals   CA-AG
Number of exons covered AT2G17670.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGAAATGGAAGCAAGAGGGTGTGCTCgtgagtctttaggtgcgttgagtttgtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAGTCTTTAGGTGCGTTGAGTTTGTTAGAAGAAATGGAAGCAAGAGGGTGTGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.146197658
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017