Detail information of Os08g0299000_circ_g.2


General Information
CircRNA Name Os08g0299000_circ_g.2
ID in PlantcircBase osa_circ_036620
Alias Os_ciR4102
Organism Oryza sativa
Position chr8: 12172119-12177017  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os08g0299000
Parent gene annotation Mediator of ErbB2-driven cell motility (Memo), related domain co
ntaining protein. (Os08t0299000-01);Mediator of ErbB2-driven cel
l motility (Memo), related domain containing protein. (Os08t0299
000-02)
Parent gene strand +
Alternative splicing Os08g0299000_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os08t0299000-01:7
Os08t0299000-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTT
GTTGAAGACCGATCGTTGCAGCAAGGTGAACACCAGccaggaaactggatgaggaacttgatgg
ttggctgagggctgctggtctcaccaagtcccctgatgtgagggcagtaattgcgccgtaagtt
ggtattta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGGAAACTGGATGAGGAACTTGATGGTTGGCTGAGGGCTGCTGGTCTCACCAAGTCCCCTGA
TGTGAGGGCAGTAATTGCGCCGTAAGTTGGTATTTAACTATTCATATGACAGTGAATTTCTTCT
GTTCTATTTTAACAATTGTTTCTTTCCATTACAGCCATGCTGGCTATTCATACTCAGGGCGGTG
TGCGGCTTATGCTTTTGGCAACATTGATCCAACTAACATGTATGTTATTTACACATTACTGTTA
CTCTTTCAAAATTTCAGATCTTCTAATAGTAAATCACTGTCTTGCTGTACCGGTAATACCTTGA
CTTGAATGCTTTCATGTAAAAGTACCACAGATGTACCGTTTTATCAACCTGTAATTTTATTTCT
CAGTGGTATAATTCGTAAAGTGATATTTATTTTATTTTGAAAGTTGGGCATGGGTTCTAGCATT
AACTAAAGAATGAGATGGTCACATGTGTTAATCCTAGAGTTTAAACCCGGGTGAGTGAGGAGGT
TAAACACCTTCCTCACCACCAAACATCCTATGTCAGTTGTTCGAACTGAACGCCAAGATAATCA
TAAACATTCACTTTTATTGCATAGATATATGATATACTTCTCTCATTCTGAACGCTGCAATAGT
TCTGCTACTTTTGAATTTTGAATATGTATTTTTAAGAATAGTTTTGGTAGATTTCTTACTTGTC
TCCTTAGCAGCCATGAAAAGGGAGATGTAAAATCAAAATGTGAAATTCACAATCAGCTTCAGCT
TTTAAGAATGCCCAAAAAATACTATTTAGTATTTACATTATTATAGCTGATTACTTTATTCTAA
TTTTCACTTTGCCCTGTTATCTCATATGTTTTCCTGTATGTGATCCAGTTCTCGGGTCTTCCTG
TTAGGCCCTTCACATCACTACTATACTCCAAAATGTGCATTAACAAGAGCTACTATTTATAGCA
CCCCAATTGGGGATTTGCCAGTAGACCATGAAGGTATGCTGCTACTGAGCTTTGTTTTTGTTTG
ACTTGGATATTTTACTTTCATAATATTACATGCCATGCAATCTGTTAAATTACGGTCTTTACCT
AAGATTTCTCTTCGATTATAGGCCAGAACACGAACATTAGTATTGCCATAAATCTGACCCAATA
TGCCTTTCATGCATGATTAGCACTTTAGCAGTACTAATATGATTTTACAACATAATTATTTTTA
GACAGCCATCCATATTAATTATTTATGTTTTGAACTTGCTATATTTTCAGACAGAGCCATTTGT
GCTTAAGATTCCCGTTTAAAAGAAGGTAGTGGTGGTAACAATCTGCCACCCCACCTGCTACCGT
TGCTACTTTCTCTTGAGTTGCCTGAAAATTTTCAGTATCACACATTAGTCAAATATAATTGAAT
TGCCACAGGCACACAGTACATTATATGAGCTACTATATTATTCAATGTGCTTAAACATTGTCAA
GTGCTCCTAGTTGCAAACAATGTGTAACTGGTTTGATGCAAAAACCACATATCTACGAATGTGG
TACTCGATTAGACACCACTTGGTACTACAGATGTGGACAGACCCCTGTCTAGATTCGTAGTACT
AGGTGGTGTCTTAGATTTGTATAGTACTAGGTTGATATATTTTGGGTCGGAGGGAGTATATTTC
TATCAGTAGCAATGCATAGCCTTTAGTTACATTGATGAAAGCAAACATCATGGTCATAAGACCC
TTGCAAGGCAGACCAGCATAAGCCATAAACAAAATAAGCAAGTTGCCAAAACAAACTATTTAGC
CTTCAAACCTCACTAAACAAAACACTCAGGCTATCAGTTAAAGCGCTGAGCATGCCCATACCCT
TCCTAGCACAATAACTGATAGTAGGGGCGTCACATCCCTAACTAAACATTCTTTGCAGGTTCTT
ATCCATGATGTATCAACAAATCTCTTCCTGTTGTGCTTCAACAATCTGCTTGCATTTTGTTTGA
ATTCTACCCATCTATCGAGAAAAACAAAAGCAAATTAGTATAAGTCTGGTCTGAGGGGAAGAGG
GAGCCATGTTGCACACTAGGCCTTCTCTCCAAGGTGGTTACAAAGGCAAAGTTCTATGTGGCAA
AGATGGAGGGCGTTGGTTTGGGACGGTGTATATCATGCCAGATAGGGTAGCTCAGGGTCTCAGT
TAATGGGTCATCACAAAATTATACGAGATTGGAAAAAAAGTTCTGAAAGGCACCTCTCCAGGTC
AAATGCCTTACCAAAGGAAATATTTTTGGACTTTTTGCAAGGTTACCTACTTAAACCAATGTTT
AACTCTCTAAACCTTGCCAGAATTGAGACCCTCCTGCACTCACTAAACAACTTACCCCTTTTTT
CTGTAAATGGGCTGAGGCCAATCTTCTTTACAGCCCTTTTGAGCAACTTCCAAGCCCACTTATT
GAGCAAACAGATGGTCACAATTTCGTTATTAAGGATTCCCCGACTCTCCAAAGTTATAAGAATA
TGTTCTCTAATCCCTCCAGAATAATTTCATCCATAGTGTTCATTTTGTGATGACCGATGAGTTC
CTGAAGGTGATAAAACCATATATGAGATGAAATAGTTTGTTGAGCTTGAATTATATTTTGCATC
CTGTGTGTTGATAGATTGCCTTTCTATTTGAATATTCTATGTATCTTACTTACAATACTGTTTT
TGCAGTAATTGAGGAACTCAACGCTACAGGAAAATTTGATTTTATGGACCTTAGTGTGGATGAA
GCTGAACATAGCATGGAAATGCATTTACCCTATCTTTCTAAAGTTTTTCAGGGGTACTTTCTTT
TCTGATAACTTTGCATCAATCTAGTAATCCCGTTTAAAAATATACCAATCCCACACTAAATTTT
CTGTCTTTTCATGTTATTATCTTACAGACATAACGTAAAAGTTGTCCCTATCCTTGTTGGTGCC
CTTAACTCCCAAAATGAAGCCATGTATGGGCAGTTGCTCTCTAAATATCTTGACGATCCGAAGA
ACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGGTAAATACTTAATTTCTACTG
TCAGCTTTTTCATGATTTGCCAACTTGCTTGTTTTCCTATGGTAATCTTTAGTGTGAGAAAACT
TTCATTGTCCTGTGTCACATTTGTCATCTACTAGTTCTGCAGAACTAATTAATGAAGTTTGCAA
TGTTTGGCCTATTCGAGGCTAAAGATCTGGCCGTGTAGAAAAGCAGAAGAGTTGGCATGCCTGG
TTTTTCATTAAATTTGCTACCCAATTTAGTTAAAATGAGCTCTATAAAATCCACAATCTTTAGA
GTTCTCTTGCCGAATATTTTTTTTATTAGACCTATAGATTGTCCAAATTCTTAGTCTTTCTACT
TTTACTCTTTCCAGAAGGTAGATAGTATGTCATAATAACAGTTTTAGCTATGACTCTCTTCAGA
TCAATTCCTCATCACACTTAGAAATATGGTTCTTTCCAAGTTTAAATTTCAGTACAAAATCTGA
ATCTTGTATGTACAAATTTGGACTTCAGTAGATGTCAAAATTTGCTCTCAATAACAAAAAGGGT
ACCATCGAATGAGCAGCATTTGTCTATCATTGAACCCCTCATAGCCAGAGTACTCTAGTTATTG
TTGTGCAGTATCTTATCTTGCCACTTAGCATAAGTGCGACTTGTCATGTGGAATAACATTTAGG
CTCAAATAATCGATATAGGCATTAGATGGAATTTGAGAACCCATCAGATCCAATTGGCAGATTC
TAGAACCATCTCAATTTAGAAAGAAAAAAATAACTCCACCTGGCACAGTGTTGTAATAACACTA
TATTGCAAACCCCAATCTCGAATCCATCTTCGGTGGATGGTGACAGCACCTTGCTTCCCTGCTA
AATTCATCAATTGAAACACCAGATGCTGTAGATGTATCCTTGTTTACATCTGCCACATGGCTTA
GCCTGATCAGGTTGGGGTCCACTATCCGCCCAATGATGATGATCACCAGTGTGCAAGCATTTGG
AGTTGTCAGGAGTGTGAAGATGGGGGGAGGTCGCTTTGGGCTCATGGTGTTTGCGGTTCAGGGA
CGACACAATTTATTTGCATAAGATTTTGGTGGGAAGTGAAAAAGGGAGCTGATTTGCTCCAGGC
TGTGTCAGGCGAATCTGCTTTAATTGATAGCGCAGAAAACGTGATTGAACAGCCCAGATCAATT
CATTTCATAATTGGACACCAAAGAATGCTTGCCCATGATACATCACCAGGCTAAGTTGTAGTTG
TTACTTCAATCTTATAGGATCTGTATATGATTATGCTCATCCGCATCGTCTCATCAGGTTTAGT
TACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAGGCCTTGGACCGCATGG
GCATGGAGATAATAGAGACTGGTAATCCAGATGCATTCAAGCAGTACCTGCAAGAGTATGAGAA
TACCATATGTGGACGCCACCCCATCAGCGTTTTCCTCAGCGTAAGCGTTGTGACGATCTAACTA
GTGTTCTCTCTTCATTTCTACTTCTATAACTTCATCATCTTTATGTAATATAATGTTCCAGATG
CTGAAACATTGTTTGACAAAGATCAAGATCGGATTTGTTCGGTATGAGCAGTCAAGCCAGTGCA
AGAGCATGAGGGACAGCAGCGTGAGCTACGCTTCTGCGGCAGCCAAGGTGGATACTCCAGCCGA
AGAAGAGAAGGATTAGATTGTGGATTTTGCACGGATCACTTGTACAACCCCCGCCTGCAGCTAG
CATGATCGGTTTGCAATCCATTGTATCTGCCTGCCAAACTCTATAAAGTAATAACAGGTTCTTG
TTGAAGACCGATCGTTGCAGCAAGGTGAACACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.321970093
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015