Detail information of Zm00001d052489_circ_g.1


General Information
CircRNA Name Zm00001d052489_circ_g.1
ID in PlantcircBase zma_circ_004586
Alias Rdr_test_circ_001258
Organism Zea mays
Position chr4: 191191748-191191907  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d052489
Parent gene annotation microfibrillar-associated protein-related
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered Zm00001d052489_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCACGACTCGTACTCCTCTGCTTCGTTCAACTCGTCGTCTGTATCGACATCCTCGATGTTGG
CCTCTTCGTTCAGTGCctttctcgatctcctccttctccttcaacctcgcatctctttcctccc
tgtccctcttaatccttgctatttctctgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCTCGATCTCCTCCTTCTCCTTCAACCTCGCATCTCTTTCCTCCCTGTCCCTCTTAATCCT
TGCTATTTCTCTGTTTTTCCACGACTCGTACTCCTCTGCTTCGTTCAACTCGTCGTCTGTATCG
ACATCCTCGATGTTGGCCTCTTCGTTCAGTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.51843854
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018