Detail information of Os03g0586700_circ_g.3


General Information
CircRNA Name Os03g0586700_circ_g.3
ID in PlantcircBase osa_circ_020553
Alias Os03circ19181/Os_ciR8655
Organism Oryza sativa
Position chr3: 21652034-21654190  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os03g0586700
Parent gene annotation Conserved hypothetical protein. (Os03t0586700-01)
Parent gene strand -
Alternative splicing Os03g0586700_circ_g.4 Os03g0586700_circ_g.5
Support reads 2/2/2
Tissues leaf/root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0586700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCTCATGAGGGCGTCCATCAGCATATTCAACAATTTTTGCAAGAGAGGGTTTCGAACTTGAA
TAACCAAGAGCGCCCATTGGATCTCTCCTCAACAGCcttgaaaacttgtggtgcaccacagaag
ttaatagtgcttgaccttttctgtccaggaaagaagtacattttgagtattgatccctttccca
aaacagaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1534
Transcript exons: 21652034-21652207,21652295-21652900,21653005-21653328,21
653761-21654190
CTTGAAAACTTGTGGTGCACCACAGAAGTTAATAGTGCTTGACCTTTTCTGTCCAGGAAAGAAG
TACATTTTGAGTATTGATCCCTTTCCCAAAACAGAACCATTACGAGCTTTGACAATGGCTTCCA
TCATTACGTCACCTTGTGAAGGCTGAAAAGATGCTTTGGATTCATCATTAACAGTGAAAAAACG
CCCAGGTCGTAACCGTATGCTCCATTTCATGCTTTGGATCTCTGGCCTCTGGTGTATCCATGCT
TTAAATGACATCTTTGCCTCTCCTTGCCCGCAGAAACCATCAAATGCTTCACTCCAAAGATATG
CTGAGAATGCAACTAATTTCAAGTACCTCTCCAAATATTCAGCACCACGATTTAATGCAACCCT
CTTAACTCTTTGCTCCACATGCTGTTGGTTAATTACTTTTGTGTACTGCAAAACAGCCTGGCGA
ATATTCTGTAAAGCCGAGCATTTGTCAATAACATTATCCAAAGTTTGTCTACACTCGATTCCGT
TGTCAAATAATCTTGTAATCTTCCGCAAAACAAGTATGTCATCAATTCCAAATCTAGGATGTTG
TTCTGTCACAGTATGAGGTCTTGGTGAACTTGAATTAAGGTGACCATTGTGATCCGTTGTTTCT
TCTCCACTTGAGTAACCCAATTCATTTGGATCTTCATGGTTATATTCACAAGCTGGCAATCTAA
TAGGTCTGCCATGATCAATTCGCAATCTCAGCAGACAAGCAATCACAGTACCTGTAGTTGTTCT
TCCCCTGCCCATCTGGCAATTAAAAACAAATGCAGTATCCTTGTGAGCAGCTGCCACATTTAAG
GTTATTGTGTCAAAATCTGAACTTTTGGGGGCTTTGCCATCAGTGATTGGCACTCGAGCATACT
TGATTGGAAGACCTTCAGACTCCAGAAGTTTGTACACCTCCAATGGAGTCAGGACAGCTTCATT
ATTTACATTTTCCCATGCATCAAATATCTCACCATTGTCAGTTTCATGAATAACCATTATGGCC
CCACTATAGCGTTCCGCTTCCCGTAAAATATCCTCCTTCAAACGAGCTTCCATTCGTTCCACCC
TATCACGATCAATTCCCGTGTACTCCAGCATATTCTTGTATGGTCTTTCCACTTCACGTAGTAC
AAATGGCTTCCCATTTATATAAATAACTGGTTCTTCTCTCATATTATGCCACAGAATTGGTCGC
CCTCCCTTGCTTGTACTAATACGCTGAATAACAGCTCGAATGCCATCAACAGTAGGGTTTGCAA
CACCATAAACCGGAAATTCAGGAATTTCCCTAAAATTAGGTGCACCCTCCACTCTTTCGGGTAA
ATGAAGGTTGTGACAACCTGGGCAGTGGTCACTTTTTAACACAGTTTGGCGTCCAAGAACTTCT
CCATTTCTCATGGCAGCAACAATATCCATCTCATGAGGGCGTCCATCAGCATATTCAACAATTT
TTGCAAGAGAGGGTTTCGAACTTGAATAACCAAGAGCGCCCATTGGATCTCTCCTCAACAGC

Genomic sequence CTTGAAAACTTGTGGTGCACCACAGAAGTTAATAGTGCTTGACCTTTTCTGTCCAGGAAAGAAG
TACATTTTGAGTATTGATCCCTTTCCCAAAACAGAACCATTACGAGCTTTGACAATGGCTTCCA
TCATTACGTCACCTTGTGAAGGCTGAAAAGATGCTTTGGATTCATCCTACAAATAGTAAATTAT
AACTAATGGTGCCATTTCCTCAAAGGTGCAAAAATGATATTTTTGGTTAGAAGAGATGAGGATA
TTTACATTAACAGTGAAAAAACGCCCAGGTCGTAACCGTATGCTCCATTTCATGCTTTGGATCT
CTGGCCTCTGGTGTATCCATGCTTTAAATGACATCTTTGCCTCTCCTTGCCCGCAGAAACCATC
AAATGCTTCACTCCAAAGATATGCTGAGAATGCAACTAATTTCAAGTACCTCTCCAAATATTCA
GCACCACGATTTAATGCAACCCTCTTAACTCTTTGCTCCACATGCTGTTGGTTAATTACTTTTG
TGTACTGCAAAACAGCCTGGCGAATATTCTGTAAAGCCGAGCATTTGTCAATAACATTATCCAA
AGTTTGTCTACACTCGATTCCGTTGTCAAATAATCTTGTAATCTTCCGCAAAACAAGTATGTCA
TCAATTCCAAATCTAGGATGTTGTTCTGTCACAGTATGAGGTCTTGGTGAACTTGAATTAAGGT
GACCATTGTGATCCGTTGTTTCTTCTCCACTTGAGTAACCCAATTCATTTGGATCTTCATGGTT
ATATTCACAAGCTGGCAATCTAATAGGTCTGCCATGATCAATTCGCAATCTCAGCAGACAAGCA
ATCACAGTACCTGTAGTTGTTCTTCCCCTGCCCATCTACAAAAATCAGTAAGTTAAACTCAACC
TTTGTAGCCTTTCATATAATTCAAGAGTTGCCTAACATAGAATTCTGGACTAATAAAACAAATG
AAGTGCAGTACCTGGCAATTAAAAACAAATGCAGTATCCTTGTGAGCAGCTGCCACATTTAAGG
TTATTGTGTCAAAATCTGAACTTTTGGGGGCTTTGCCATCAGTGATTGGCACTCGAGCATACTT
GATTGGAAGACCTTCAGACTCCAGAAGTTTGTACACCTCCAATGGAGTCAGGACAGCTTCATTA
TTTACATTTTCCCATGCATCAAATATCTCACCATTGTCAGTTTCATGAATAACCATTATGGCCC
CACTATAGCGTTCCGCTTCCCGTAAAATATCCTCCTTCAAACGAGCTTCCATTCGTTCCACCCT
ATCACGATCAATTCCCTGGTGTTGGTGCATTGTGTATCATTTAGACCAACAGAACAGTTTTGGG
AATAAGCTCAACAGAGCACATGCTTCAAGTATTAGTTTATTAAGCACAACGAAACACAATAGTA
GACAAGTATACAAATTCCAAAAACTGAACAAAGAACTAAAGTTTTCATAAAACCAGAATTAGAA
CAAGTCCTTTGGACAGTTACTTCAGATTAAAAGTTAAGTAGTTAAAAGAAACAAATATAGTTAG
CTTAGCTATGGATATTAATATTCAAAATAACTTATGAGAGTTTTCCCATTGGTGCACTCTGATA
CATCAGGAAGGAAAAAAATTACAAGTCTATGTTAGATCAGGTGCAAAATTAACCTAGGGTTAGA
GCAAATAATCTTGAGCATCCACTATGTTACAAATCTGTCAAAGCAACCAGACATGATGCATACC
GTGTACTCCAGCATATTCTTGTATGGTCTTTCCACTTCACGTAGTACAAATGGCTTCCCATTTA
TATAAATAACTGGTTCTTCTCTCATATTATGCCACAGAATTGGTCGCCCTCCCTTGCTTGTACT
AATACGCTGAATAACAGCTCGAATGCCATCAACAGTAGGGTTTGCAACACCATAAACCGGAAAT
TCAGGAATTTCCCTAAAATTAGGTGCACCCTCCACTCTTTCGGGTAAATGAAGGTTGTGACAAC
CTGGGCAGTGGTCACTTTTTAACACAGTTTGGCGTCCAAGAACTTCTCCATTTCTCATGGCAGC
AACAATATCCATCTCATGAGGGCGTCCATCAGCATATTCAACAATTTTTGCAAGAGAGGGTTTC
GAACTTGAATAACCAAGAGCGCCCATTGGATCTCTCCTCAACAGC
Conservation Information
Conserved circRNAs osi_circ_004934*
PMCS 0.533692213
Functional Information
Coding potential Y
Potential coding position 21654173-21654121(-)
21652139-21654121(-)
Potential amino acid sequence MGALGYSSSKPSLAKIVEYADGRPHEMDIVAAMRNGEVLGRQTVLKSDHCPGCHNLHLPERVEG
APNFREIPEFPVYGVANPTVDGIRAVIQRISTSKGGRPILWHNMREEPVIYINGKPFVLREVER
PYKNMLEYTGIDRDRVERMEARLKEDILREAERYSGAIMVIHETDNGEIFDAWENVNNEAVLTP
LEVYKLLESEGLPIKYARVPITDGKAPKSSDFDTITLNVAAAHKDTAFVFNCQMGRGRTTTGTV
IACLLRLRIDHGRPIRLPACEYNHEDPNELGYSSGEETTDHNGHLNSSSPRPHTVTEQHPRFGI
DDILVLRKITRLFDNGIECRQTLDNVIDKCSALQNIRQAVLQYTKVINQQHVEQRVKRVALNRG
AEYLERYLKLVAFSAYLWSEAFDGFCGQGEAKMSFKAWIHQRPEIQSMKWSIRLRPGRFFTVND
ESKASFQPSQGDVMMEAIVKARNGSVLGKGSILKMYFFPGQKRSSTINFCGAPQVFKAVEERSN
GRSWLFKFETLSCKNC*(-)
MVLFWERDQYSKCTSFLDRKGQALLTSVVHHKFSRLLRRDPMGALGYSSSKPSLAKIVEYADGR
PHEMDIVAAMRNGEVLGRQTVLKSDHCPGCHNLHLPERVEGAPNFREIPEFPVYGVANPTVDGI
RAVIQRISTSKGGRPILWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRDRVERMEARL
KEDILREAERYSGAIMVIHETDNGEIFDAWENVNNEAVLTPLEVYKLLESEGLPIKYARVPITD
GKAPKSSDFDTITLNVAAAHKDTAFVFNCQMGRGRTTTGTVIACLLRLRIDHGRPIRLPACEYN
HEDPNELGYSSGEETTDHNGHLNSSSPRPHTVTEQHPRFGIDDILVLRKITRLFDNGIECRQTL
DNVIDKCSALQNIRQAVLQYTKVINQQHVEQRVKRVALNRGAEYLERYLKLVAFSAYLWSEAFD
GFCGQGEAKMSFKAWIHQRPEIQSMKWSIRLRPGRFFTVNDESKASFQPSQGDVMMEAIVKARN
GSVLGKGSILKMYFFPGQKRSSTINFCGAPQVFKAVEERSNGRSWLFKFETLSCKNC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA