Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0586700_circ_g.3 |
ID in PlantcircBase | osa_circ_020553 |
Alias | Os03circ19181/Os_ciR8655 |
Organism | Oryza sativa |
Position | chr3: 21652034-21654190 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl, find_circ |
Parent gene | Os03g0586700 |
Parent gene annotation |
Conserved hypothetical protein. (Os03t0586700-01) |
Parent gene strand | - |
Alternative splicing | Os03g0586700_circ_g.4 Os03g0586700_circ_g.5 |
Support reads | 2/2/2 |
Tissues | leaf/root/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0586700-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_004934* |
PMCS | 0.533692213 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21654173-21654121(-) 21652139-21654121(-) |
Potential amino acid sequence |
MGALGYSSSKPSLAKIVEYADGRPHEMDIVAAMRNGEVLGRQTVLKSDHCPGCHNLHLPERVEG APNFREIPEFPVYGVANPTVDGIRAVIQRISTSKGGRPILWHNMREEPVIYINGKPFVLREVER PYKNMLEYTGIDRDRVERMEARLKEDILREAERYSGAIMVIHETDNGEIFDAWENVNNEAVLTP LEVYKLLESEGLPIKYARVPITDGKAPKSSDFDTITLNVAAAHKDTAFVFNCQMGRGRTTTGTV IACLLRLRIDHGRPIRLPACEYNHEDPNELGYSSGEETTDHNGHLNSSSPRPHTVTEQHPRFGI DDILVLRKITRLFDNGIECRQTLDNVIDKCSALQNIRQAVLQYTKVINQQHVEQRVKRVALNRG AEYLERYLKLVAFSAYLWSEAFDGFCGQGEAKMSFKAWIHQRPEIQSMKWSIRLRPGRFFTVND ESKASFQPSQGDVMMEAIVKARNGSVLGKGSILKMYFFPGQKRSSTINFCGAPQVFKAVEERSN GRSWLFKFETLSCKNC*(-) MVLFWERDQYSKCTSFLDRKGQALLTSVVHHKFSRLLRRDPMGALGYSSSKPSLAKIVEYADGR PHEMDIVAAMRNGEVLGRQTVLKSDHCPGCHNLHLPERVEGAPNFREIPEFPVYGVANPTVDGI RAVIQRISTSKGGRPILWHNMREEPVIYINGKPFVLREVERPYKNMLEYTGIDRDRVERMEARL KEDILREAERYSGAIMVIHETDNGEIFDAWENVNNEAVLTPLEVYKLLESEGLPIKYARVPITD GKAPKSSDFDTITLNVAAAHKDTAFVFNCQMGRGRTTTGTVIACLLRLRIDHGRPIRLPACEYN HEDPNELGYSSGEETTDHNGHLNSSSPRPHTVTEQHPRFGIDDILVLRKITRLFDNGIECRQTL DNVIDKCSALQNIRQAVLQYTKVINQQHVEQRVKRVALNRGAEYLERYLKLVAFSAYLWSEAFD GFCGQGEAKMSFKAWIHQRPEIQSMKWSIRLRPGRFFTVNDESKASFQPSQGDVMMEAIVKARN GSVLGKGSILKMYFFPGQKRSSTINFCGAPQVFKAVEERSNGRSWLFKFETLSCKNC*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Chu et al., 2017 |