Detail information of BGIOSGA009403_circ_g.1


General Information
CircRNA Name BGIOSGA009403_circ_g.1
ID in PlantcircBase osi_circ_005278
Alias 3:40648135|40650286
Organism Oryza sativa ssp. indica
Position chr3: 40648135-40650286  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA009403
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA009403_circ_g.2 BGIOSGA009403_circ_g.3 BGIOSGA009403_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA009403-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATAGAACCAGATATTGATCCGATTGCCCAGCAGAGAGTATTGAGGTTATTCCAACTCCAGTC
TTCTCCATTTAATTGCTTACTCAATTTCTTCAGCATctgtaaactgtcaacatgtcaagaaaga
ttagggaaatttgcgggaaaaagtgtggtccaagtgagctagcaacacttgtgtttgtctgcaa
gcacatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTAAACTGTCAACATGTCAAGAAAGATTAGGGAAATTTGCGGGAAAAAGTGTGGTCCAAGTG
AGCTAGCAACACTTGTGTTTGTCTGCAAGCACATATAACAATATTTATTACACCAGGAGAAATA
ACAAAAAACCAACAGTATCTAAGACCAAGGAGGGTTGTGCAAAAGGTAAATGAAACTGAAAATT
ACACTAAAAACAGCACATTGTACACAAAGAAAATGTTTTAATTCAACAGACAGCGAAGCACACA
GAGGAACCAAAAGCAAGCAAGTGCAATTGCTGGCTAACTACCTAGAGGTAACACACAAACAACA
ATTGCAAAATATTTTCTAGAATGTATGATATCTACAGTTTTACACAGCAAATTGACCCTAAATA
TTTTCAAAGTTCCCAAGCACAATCTCACAAGAAAAAGCATGCTCTATAAATTGGTTCAGTGAGC
TATAATGAACAAAAATGTCCCTACCAGTTCGTGACTTAGCATATACCTGGCTACGCAGTTCAGT
TCCTACTAGGTGGACGATCTAACTTTGAAGCTTTACAAATTATAAAATAAATAAATAAAAAGAA
CATCAAGAAAAAACAAAAACAACGAAAGAAAGGAAATAATACCGCAGTTCACACAGCGAATTTC
AAAACAATAGACAAATGAAATTCTCAGGCTCCATTAAATTACCTGCAGGATGTTAAGAACAGAT
CTAATAACATCCTGGTTCTTCAGGATATCAATGCTTTGGCTTGCCTGTCCAATTATCTCGGCCC
ATTTCTGTTCAATGATAGGAAAACCTGTCAAAACTACATTTTCCAGAAAAAGTATAAAGGCATA
CTAAGAATGTAGAATAAGGAACCTGATTAGGGAGGCTCATCAGTCTTTTGAGGTATTCATCTCT
CTTAGTGTTATCAGATTCAGCTTGAATCATGTGGCCAACCTGAGCAGAAAAATCAGATAGCACA
AAATAATATTAATGATAAACTATTCTGATTGAAATTGTGTTTTACTTATTTGGTTTTTAAGCAT
ACCGATTCATAAAACGTATGAATCTGGTGCGGCTCAAGATCACCAATTGTCGTGGCAAGGCTGG
ACAACAGTTCAGAAACAAATGGTTCGTTCTCGCCCACCTAGATAACAAAGAAACATGAAGTTGG
TGTGTCACCGGTGCATATTAGCATAAATTAGATGCATGTGCTTAAATTAAATTCAGCACATGCT
TTAAATAAAACATAATTTGTAATGAAATAGCAGCAAAGTATCCACATAAGAGTTTGAGATATCA
AGCAATGTGATTGAATTTACCTGTTGTGTGACAAATTTGCGCTTGCATTTCTGAACAATTTTCA
GAAAAGTATCACACGCCATATCCTGCAATCAGCAGAGCAAGGCATACATTACATACAACACTAA
CAGAAGTGTTGAGGCATTAAACTCTTTGCACAAACTGGAGATAGCAGCAAACAGCGTGTGTGAT
GATCAAACAACAGATACATGAGTAACTTGTTATTAAGATCATGGAAGGAAAGATGGCTGCAAGC
AGTTCCAATCTAAGTTCCACACTACAAGGGCTGCAAAACAGTGATTCTGCACCAACACAACAGA
CTACATGTGAATGCACACTGACCTGAACTCCAGGATGCATCTCATGCATGAACTCAAATAGTTT
GTTAACCACCGTTTTCAAGAACTTCCAATGAGCCCTGAGAAATCTTGGGTACTGACCAACAACA
TACCTAACAAAGCAATCATCAGATCAGTCAAACCTTAATTTTGTTAGTATAAACATGGGTAGTT
GAGATGAATGCTTACATGATGTTACTGGCAATCACAGCTTTATTATCCTTCCCCTTTGTGATTT
CACAGAGATTTAATAAATCGCGAATAACCATTACCAAGAACCTATTTTCCTGAAAAAGATCCAC
AGAAACCATTAAGAATTTCAGCACTGCATGAAATGGTCAAAATTATCACAAAGCTAAATATTAG
TCCTCCTTAACGTTTGCCAAAGACAAAAAGAATGGAACAGTGTATGATTATTCAAACCTGTTCC
TCCACCATAGAACCAGATATTGATCCGATTGCCCAGCAGAGAGTATTGAGGTTATTCCAACTCC
AGTCTTCTCCATTTAATTGCTTACTCAATTTCTTCAGCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 40650288-40650282(-)
40649943-40648201(+)
Potential amino acid sequence MLKKLSKQLNGEDWSWNNLNTLCWAIGSISGSMVEEQENRFLVMVIRDLLNLCEITKGKDNKAV
IASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEMHPGVQDMACDTFLKIVQKCKRKFVTQQ
VGENEPFVSELLSSLATTIGDLEPHQIHTFYESVGHMIQAESDNTKRDEYLKRLMSLPNQKWAE
IIGQASQSIDILKNQDVIRSVLNILQTNTSVASSLGPHFFPQISLIFLDMLTVYRC*(-)
MMLLAITALLSFPFVISQRFNKSRITITKNLFSCSSTIEPDIDPIAQQRVLRLFQLQSSPFNCL
LNFFSICKLSTCQERLGKFAGKSVVQVS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021