Detail information of 1_circ_ag.21


General Information
CircRNA Name 1_circ_ag.21
ID in PlantcircBase ath_circ_001544
Alias NA
Organism Arabidpsis thaliana
Position chr1: 2912345-2917162  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.22 AT1G09050_circ_g.1 AT1G09050_circ_g.2
Support reads 9
Tissues root, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAATTCTTCGTTGTCTTTGTTCCTGTTGCCAACTCCAGATTCCCACAGTGCCACAATCTCTAA
CATTGCAAAGTTGAGACATCTCATAAACTAACTCAGgtttcactacgttgaggatggttcttct
gatgggtgccgagaataatcttatggaagaaacaacagctgttaccgaagaagattcctatgat
gatgagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCACTACGTTGAGGATGGTTCTTCTGATGGGTGCCGAGAATAATCTTATGGAAGAAACAAC
AGCTGTTACCGAAGAAGATTCCTATGATGATGAGTTTCCCTGCGGAGATCCACAAGTTGAGCCT
CGTGTTGGAGATGAATTTCAGGTCGACATTCCTCCTATGATGTCTGCAACCAAGCGTGCTGTGT
TTCTTTCGACTCCTGTTGCTTTGGATGATTCGTCATATTCTTTTCTCATCGGACTACCTGTCCA
AGTCATGTGGATAGACAAACATAGAAGAGGGCAAGGAAATGGAGATGACAATGTTGACATGAAC
CAGTCCTTGAAGTCTTTAAGAGCCAAAAAAAGCCGTTGCTCTGCCAAGATCAGAGGAAAGAGTG
ACAAGAATTCGGAAACCAAGAAGCAAAGATCGAATCTTGAGGCTGTTCCTGTGATACCGTCCAG
TTCTTGGGAAGATTTGGAGGTGGCTAGCTTTGTTCTTGGTCTGTATACATTTGGGAAGAACTTT
ACTCAGGTGAAGAATTTCATGGAGAACAAAGGAATAGGAGAGATCATGTTGTTTTACTATGGGA
AGTTCTACAATTCTGCAAAGTACCACAGTTGGTCTGAATCCCGAAAGAAGCGCAACCGCAAATG
TGTATTTGGAAGAACGCTCTATTCAGGTTGGAGGCAACAACAATTGTTAACCCGTTTGATGCCT
TCTATTCCTGATGAACCTCAGAAACAGATACTTGTGGATGTGAGTCTCTTTCACATCCTAATGC
GGAATGCTTAACCACTGTATATTTGTTTTTTCATTGATCTTACTATTCGCAGGTCTCAAAGTCA
TTTGCTGAAGGTACTATCACTCTAGAGAAATACGTAAGTGCAGTGAAGAATCTTGTGGGTCTCA
GGCTTCTGGTAGACGCTGTGGCGATTGGTAAAGAAAAAGAAGATCTCACGGTTCCTACATCAAC
ACCAATGAAGACCAAACCATGGTTCACTGTTTCTTCAAAATCTTCTTTGGTCCCTGGAGAAGGG
GATTACAATTCCCTCACATCGGCTGGCATAATAAATCAGTTAACTGGCTGTTCTCGTCTGAGCA
AAGCCCGTTGCAATGATATATTCTGGGGCGCTGTATGGCCGCGTTTGCTAGCCAGAGGATGGCA
TTCACAGCAGCCAGAGGACCGTGGCTATTTCAAATCTAAGGATTACATTGTTTTCATTGTCCCT
GGCGTGAAAAAGTTTTCAAGACAGGAGCTTGTCAAAGGAGATCACTACTTTGATTCCGTCAGTG
ATATTCTAACAAAGGTTGTGTCAGAGCCTGAACTTCTTGAGAATGAAACAGGAGGAGTTGCTGC
AGAGCTTTCTTCTGACAAGTCAGATGAAGAGTCTGTCCCGTCTGATAGTCTAAGACACCGTTAC
CTCAGGTCTCCATGTTCTAACCGTGGAACTCTGGGAATGAAATTCACTGTTGTGGACACTAGTT
TGGCTACTGGAGGAAAGTTGTGTGATTTACGGAATCTGAATGCAGAGTGTCTAGTAGTTTCTGA
GCCAAACGTTCGTCTAGAAGTTAAAGATTCTCCTGTGCTTAAAAATTCTCTGGACAGTCAGAAT
GTGGAAAAGTCGCAAGTGAGGCCTCTGGATGCCAAGAACCAAGTGGATGACCCAATGCGATTCA
CGATTATTGATACGAGTGTAGACCACTGCGAAAAATCATCTGGGTTTAGGAGATGGAGATATTT
ACCAAGTGATGAAACAAAAAGGGGTCATGTAGGGGCTGATTCTGGTATAAAGGAAGAGAAGACT
TTGGAGAAGGTTAAGGATCCATCAAAGAGGGTTATTAAGCATCGGTCTACCCCTCGAGCAGAAA
CTAATTATCATGCTGTAAATTCTGCACCATATTTGAAACGCAGACGGCTCAGTGCTTGCATTTC
CAGAGAAAGTCCAGTGTCCAAACATATACCAGGTGATGATGACACAAAAATGACTGTTTGTCTT
GAATCAGAGCAGCAAAGTATATGTGTGGTCCAACAACAAACTAGCACTTGTGAAGAGATGAATC
AGGATAAAGAGACTGTGCCGTTGGTTGAGCATATGAAATTAAAGTCTGATCAATCAAAAAAGAC
TGGAACTGGGCCATCATCTTTGCTTGTTGAGATTCAAGAAACGACAGAGATTGAACCAAGCGGG
TTAAATTCCAACACTGGTGTAGACAAGAACTGTTCTCCAGAGAAAATAAGTACATCCCATGAAC
AAAAACCAAATGGGCTTTGTTCAGTGTCAAAGTCGGACAAAAAACGAGCTTCCAATGATCTGGA
ACAAAAGCAAGCACTTGAGCTTCCTTCCATTTCAGGCTTAAACAATAGATCTTCTTCCAATGAT
CTGGGAACTACTCAAGAGCTGGGTTCATCTGAACAACAACACGGCCAACAGAATAATACAGATG
GTCCTAGAAGACAGAGCACAAGAAAGAGACCATTGACCACTCGGGCTCTGGAAGCTATGGAATC
CGACTTTCTTACAACCAAGAGAATGAAAAGCACGACTAAACCAGAACCGAGAAAGCGTGAAAGT
TCAACGAAGAAAAAACGCTCAGCTAAAGCGTGTAACAGAAATGGGAGTGCAGACTTGGAGCACA
GAAGAGAAGATAGAAACATTTTTATATGGAAAGCACCAACAAGTAAGCCCTTGGATCAAATAGA
GGATACAAAGCCTCGCTATCTTCTCAATGAAGCAAGAACTGAGAGTAAGACTCTAGATAGAATA
CAGGAGTCAAGGCCGGTCCTAACTGAATACCGTAAGCTTCCCCCGATTGTATTGAAGCTTCCGT
TCAGGCGTGGCTAAGGAGAAGATTGGACTTAAGTCTGAAAGTTTTGATCGCTGGATGTGAGAAG
ATTGGTCTTCCTGAAGCATAAATGTGTACAGAAGAGAAATGTTTTACACAAAGGATTTTTTATT
CCTCTTTTATGCTTATTATTTCCATAATTAGGCAGAAGTAATGTTTCTATTATTGGTTTGCTTT
GGAGTTATTTGAAGTAGCTTTTCATATGGTCTATTATTCAGAAATATGAAGTTGAAATAATGAT
TGTTATGAATATAACCAAGCATGATATACAAAGAGTCGATCTAGATACATACAAATCCTCCCGA
ATAGTAGTAGATAGTAGTAGTATAAACTAAAGTCACGAGAATGATTTTTAAACTACTATACAAA
TCTTGACTGATTTATGTGCAGCTCATTTGCTGCGGTCGCTTGTTTAAGTTGTGACTTGTGAGAG
ACGGCTTTGGTTAAGTTAGAGTCCTCAAAACCAAGCCCTGCTCCAAATCTTTTGCAGCCAAATA
ACATAGGAACCAAATTGTCAGTTCAAATTCATTTCACACTCTTTAGATTAGTTTTGGCTTACTT
TGGATCCAAGACCAGATTCTGAACCTCTATGAAGGCTGAGCTAGCTGCGTTAGAAGCTATCTTT
CCCATCTGATATCAAAAAACCAATTTTTTCAACAAAGTTTGTTTAATTTATTACAAGCCGGCTG
AGTCAAAGATTGGGACGATCAAATTTGTTTATTTTTTACTAAAACATTATTTGGCAAATGGTTT
GATACAGTTTTACAAACGTTTAATTATGAGATTACTAACTTTCATTTGACTGAACATGTTTTCA
GTCTTTCAAGTAATGAAGACCACATGCATGATCAAAAAGAAAGAAGAAGACAGACGACCTGATT
TGATGGCCTTATGGGCTTTCTGTTTTCTGATATATATAAGTTTGTTTCAGTTTTTCTACGTCCA
TGGGTCCTTCTATTTTTAGCCCATTATGAACTTTGAAGCCACGAAATCCATCGACTGTTGTTTA
CCTTGGCTTAAGGTGAACTACTTGCTTTATTTATCTTACACTTTTTCGAAGTAAGTATTTTGGC
AAAAGAAAACTAAAAGTATCTTTGCTCAAAAAAAAAAAAAAAAACTGAAATTATAAAAAATACA
GCACTTCAAATTAAAGAAACTAAACTAAATTGAGTGATCTATAGTTTATATAGTTATTATGAAA
TAGTAAAAAAGTTGATGGTTTTTAGTACCTATGTAATTTTGGATGGTTTTACTGCTACCTATAT
AATTTAAACATGACGCTAGTTTTTTTTATAAAAAAAATCTAATATGGATTTATATTTACATCAT
ACGAGAGTTCATCAAAAAATGAGATAAGTTCATCATAAACTGATTGGTTACATTATATGATTAT
ATAGTAATTTAGCAAAATTTAAAATTATTTGACTACAATTACGAACATTTCCATTTAGCGAAGT
TTCCCTTAAATAGTTTGAATATATATTAAATAATAGTGTAAATCTTTTATAACCTTTTTAAACA
TCATATTATGTTAATATTGATTGAAATTTAGCATGAAACTATATCATCAATTAGCGTAAAAAGA
AAAGAAAAAAAACCTAGTAGTAGCACATCGAATGGAATAATGAGGAGAACACAAAACACGTCCA
CGACTTTAGAATATTTCTTAACATTGAACACTTAAGAATTGAAAACAATAAAAACACTCTAATA
AACCCTTAAAATAGCCAATGAAAATCTCCAAAGTGTGCATATAGAAAGAAAAAAAAAGATCTTT
ATATTGCGACTCTCTCATATTTTGCTCTCCTTTTATGTGCCTCATTCTCCTCTCGAAGACTTCG
TGTTGAAAGAGCGACCAGTGCTCTTTCTCTCTATCCACAAACACGAACAATTCTTCGTTGTCTT
TGTTCCTGTTGCCAACTCCAGATTCCCACAGTGCCACAATCTCTAACATTGCAAAGTTGAGACA
TCTCATAAACTAACTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.657551347
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR415
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017