Detail information of BGIOSGA005644_circ_igg.1


General Information
CircRNA Name BGIOSGA005644_circ_igg.1
ID in PlantcircBase osi_circ_004278
Alias 2:33054435|33057722
Organism Oryza sativa ssp. indica
Position chr2: 33054435-33057722  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCCTTGCCTACCACGGAGAACTCCCGGATGTAGTTCGCCTTGAGCACCCGCACGTTCCTCCGC
TCACCTCTCTCTGCCCTCCCCACGCCTTCCTGTGATagatttagctagctgatgagatagttta
tggcatggattttgcagaaacaaattttagaaaaatctattgatgattcagcccttaaagtaga
gtacaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATTTAGCTAGCTGATGAGATAGTTTATGGCATGGATTTTGCAGAAACAAATTTTAGAAAAAT
CTATTGATGATTCAGCCCTTAAAGTAGAGTACAAAGGGGGAGTTCAGGTGAAAAGCAGCCGAAT
AAGTTAGAATTGGCCAGGTACACGCACATGTAGCCTTTTCCTTTCAAAGTCAAGCTGCAAGACA
CACCCCAAAAAGAAAAGATGAGATACATAATGATTAGCCATTTTACTACTCCCTCCGTCCCAAA
ATATAACAACTTTTAGACCTTAGGATTTGTCCCAAAATATAACAACTTCACCAACATGCTCTTC
CCAACCAATCACAACCCTCCACTATTCACTTTTCCCACCTACCTCCACTACTCATCCAATCACA
ACCCTCCACTACTCACTTCTACCTACTTTCTTAATAACCGTGTCTAACTCTAAAACTTCTTATT
ATATTCTGGGATAGAGGCAGTAGTTTATATTATTAGTACAAATATGGTTCACAAGCATCGATGC
ATTACCACTTTCTTAACCCGTTCATTTGCAGCAGATGTTCCTCCACTGACATTTTCAGGCAGGT
ATGGATTGCATACACGAACCTCCTTCATTACAACAATGTCAGTCTTGTCCCACTGAACTGGAAG
CCTGAGAAGAATATAACTTGTTATATGCATACAAATTTACGTTTAAAAAAAACAGTGTTTCATT
ACATTTTCACATATATACCAAAAAGTTGTGCTAATAATGCAACACGCGAGGACAACAGGTGGAA
AACTGGCAAAACATATAACATAGTTCCATGATGTAGAGAAGCTTTACAAGATTTGTCAAAAGCA
ATTTGTTGCGAACAAATTAGAGTAAGCCACATTGACAGAAAACAATTTGACACTAACAGAATAA
AATCAAACAAAAAGAAAGAAAATTTATTGCTGTGAAAAACATGAAGCCAGCGTCTGCTTGCCTT
AAGTACAGAAAATATCACTGTGTTGTATTCTTTAACTAAAAGCAGGAGCAAATTGTACAATGGC
ACAACCAAGATCTGACGAATCGGAAAATAATAAACAGAACTGACATGTCAAACTCACATGGGTT
TTATTTTCTCCAAAACAAACAGAAAATAAATTTCGAAATGCTGACAATAATCACCTAACAGAAC
CCAGTCAAAACAAAGTATCAATTCGTGAAGAGACCATTCTACCACACCTGGAAGCAGCTTCAAA
TTAAAATAAGATTAATTCTCAAAAGAACCCATGCAAAAAAAGCACAGGCATGAATAGCATTTAA
TGTAAGGACATTCCTCCAGCTTTTAGAGCAGCAAATAAGCAAAAGACTAAAGGCGTGAGGCGTA
TTCATAGTATGCGGAAATCACATGCTTGTCCTTGTGAAATACAGAGTTGTCAATGAAACAAGGT
TGAGTTAAAAATATACTTTTGGAGTATGTATCCAATAGGAACACTATGAGTATATGATAGTAGC
ATGTGCGGAGATGTGAATCTCTCAGAACAAGATATGAAAGGTTACTCACGTCTTGGACAATGCA
TCAAATATGCTTTGAGCTTCTGGGGTGACACCAACACCAATTCTCTCGGCTTCAATCTCAGCTT
GTCTGCACATGAGCCAGAACATGAAAGTGTGTGAGCTAATTCTCAGCTTGTTAGTAAGGACAAG
CTTGATGCAAAATGTAGAGTATAAGATATTTGAAACCATTAAACACCACATAGGTGAATAGGGA
CAGGACTGAGAAATCTATGACAAAATGAAAAGTTATAACCAGCCATATGCTAACACTTAACAAC
CAAACCAGTGTCACAGAGATACAGACCAAACAAAATAAACCAATGTCATGATATATATTGGCTA
TGCCACATACATCATTAGTCAATAACATCAGCTGTCGAGCAATTTTCACTATAACTACACTAAC
CAGCCAACAAACTATAATATCCCCATGTACTGTGCTTCCATCAAAACATAAATACCCCCAAAAT
AGTAACTTAACATTCAGTGTTGATGCAAAAATCACCTATTATAAGTAAACAGCAGAAGATCTCG
AAATTATCTTTTTAGTAGATAAAGCAAACATTTTTCTGAGTTCACTAGCCAAATACCAAGTGCA
AAAAATATTTAAAATATATCATAAATTTTAAACTTGAAAAAGGTATACTTAATTCCTATAAAAA
ATCATATTTAATCCCTAACAATTCATAAAAGCGTAGAAGCAAAAGAAAACATTTAGATTACAGT
TTATGCTTGAAGGAACCAAACCATGACAAGCCAGTTTTGAAACCTGGTTTCTAAAATAAGTTAA
TAGCATGAGCTCAGAGCTGATACATAAGCAATTTAACAGGTTGGCTGTTGCAATATTGCATGTC
TGTAATTCTACAGGGTGCACTACAGTCTTGAAGAAGCGAAAGTACACACTGTCAAACCAAGTTT
TACAGTCTTCAATGCTCTCTTGAAATCCATAATAGCCCTAATAGCCCATATCCCGGAATTTTAA
ATTGCATTGCACACATGTCTTTTGCTTCATTGTCCAATGACCAGAGTAGCTACAGTTCTTGATA
GAAAGCCAGAAGGCAACAAACTATAAATCTCCAACTCAAATACAAAATCTAAGCTATTATAATC
TGTGAACCAAGACAGGTTTTCTTTTGGGGGGTGGGGAGGGGGCTGCTTGTTGACAGATTCAATT
TCGACTCTTAATATTTTGATGAACGACCAAGAACTTCATAACAGTTTAAACAGTGTGATTCTGT
TCTAGATAGCATGGCCTTTCTTCGATCTCCCCTCCTGTTTTCAAGCACCTATGTGTCCTTGTTC
ACTTGCTATCACTTATTCTGACTGGATATCCACATAACACGGAGTATATCACTTTTACCAACTA
GAAAGGTCAGGTCCACTGTTGCGACAGCTATGACATAAGTCGCTCGATGATTATCACAGGAAAA
AAAAACTGAATTTCACATTTGCAGTAATTAGTATCTGGAAAAATATGCCATGTAACACATGTCA
TCAAGAATTGTATGATCAATCTAATTACTCCAGCTTCAGCCTGAGAAACACATCTGATAGGGAG
CACACAGTGGTAGAACAGGGTCGAGATGGGAGTGTGACGCACCTGAGAGCGGCCTCCTCCCGGG
CGTGGATGGCGGCGAGGTCGAGCACGCAGCCGGCCGGGTCGAGCGGGTCGTCGGCCTTGCCTAC
CACGGAGAACTCCCGGATGTAGTTCGCCTTGAGCACCCGCACGTTCCTCCGCTCACCTCTCTCT
GCCCTCCCCACGCCTTCCTGTGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021