Detail information of Os01g0572700_circ_g.1


General Information
CircRNA Name Os01g0572700_circ_g.1
ID in PlantcircBase osa_circ_002279
Alias NA
Organism Oryza sativa
Position chr1: 22023836-22026163  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0572700
Parent gene annotation Conserved hypothetical protein. (Os01t0572700-01)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTCAAATTGAGGTTATGTACGTTACTGAGTTTCTGGAATGTTATCCAAGCAAACAGTACTAC
GAAAAGAAACGGTCATCGGGTTGAAGAATTAAGCACagctcaaggaactgcggtgttatcctac
aatccacacaaataaggaaataatgataggaatctgttccttccacgaaacatatagtgatata
atattgcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2328
Transcript exons: 22023836-22026163
AGCTCAAGGAACTGCGGTGTTATCCTACAATCCACACAAATAAGGAAATAATGATAGGAATCTG
TTCCTTCCACGAAACATATAGTGATATAATATTGCCAACTTTACAGAAAAGGCAAAATATATTT
ATGTGCGTTTGGAAGTCCATAGCAACATGCCTTGCCCAGGAGTGTTACTTGGAGTAGCCCTGGC
TTGAAGAGGAATAGATTCTCTAATTAATAGTTTACTAGAACCTAGCATGTTCATTGCAATGAAT
TTAAGATAGTGAAAATATGGTTAACGTGCCATGATTTTTTTCTTCAAATGAAATATGAAGGAGG
AAGCAGATTTTAAAGCTACAAAAACATTAGACTTAACTTTGCTAACACTTCAAGGCCAAGAATA
ATGGGTACCAATATCTAACATGGTTGCTTAAAAGAATATGATATTACAAAAGTATAAGATCAAT
TGCTTTCTAGAAAGGATTAAATTACAAATGTGTATTTACTACCACTAGGTAACGATCTAGAGAT
AAATGTTTAATCACACAGCCAGGAACCAAAGCAAGTCCATCTGAGCAATGACCTAAGCCAAAAC
TAACTTGACCTGTTGAACCAAGTGCAGTCCAGGTCAACTTAATCTTGTCCTAGGCCCATCCTAG
GACTAACCAACTAGGAATAGACCCTACCAGCTTATCCCACCCAAACCCACTATTTCCCTGCTTT
GTTCACTTGTTAATCAAAAGGCCATTGTAGTACTATGATGCGGAGCAAGAGTTGAGCTTTATTT
GTGAGCAGGGTTATTCTGTTAGTAATAATTGATTGATTAGTTCATTCTAACAGACACACAAGAG
ATTATCCAATTTTATGATATGGGACAACTCAAGAAAAGAATAAATGCTATAAGGATTTACATGA
GCCCTGACCAACGATAAATAGCTTTATTGAAGGCCTTGAGGAGAACATGCTCATAGCACAATGG
TAAGACCTCCAGGTATGAGGCTGCCAACCAGGGCTCAAACCTGGGATCACGCAAAGAAAGGCCC
CTTGCTGTGTATGCCCCATGGTCGTGGCAGGTCACTATTCACTAAAGCGATAGCTGGCTTTCTG
GGCCTTTTCTTGACCTTAAAGCAATGCTTTCGGAACGTCTCTCCACTTGGATCGAGTGTTATTA
TTATTAACAATAATATTAAAGGCCTTGATGCCAGCATTCACTTGTTCAATGAACCAAATTAACC
ACTTCATTTTGAAGTGTTATATCATCTACATAAACATGATCATGTTAAATTTTAGTTCCTTCAG
TTTTTTATTCCCTCCTTTTCATATTATAAGACGTTTTGAGTTTGTCCTAAGTCAATTTCTTCAA
GTTTGACCAAGTTTATAGAAAAGCATAACATCTACAACACCAAACTAGTTTCATTAAATCCACC
ATCGAATATACTTTTAAGTATATTTGTTTTGTGCTGAAAATGTTGCTGCATTTTTCTATAAGCT
TGATTAAACTTGAAGAAGTTTTACTTAGAACAAACCCAAAATGACTAATAATATGGAACAGAGT
GAGCATTATGTTTACGGGTGGTAATGGGCTTGGCCCATGGGTCCTTTCACAGCCCAATTTTCTA
GGCTAAAATGTTGGGCCCTTTACCACCCTTAATTCTGTTAGGTGTCATACATCAGGAATTCAGG
ATTACTTGCAAAGTGGCAAGTTCTACCTTGTATTAAAATGCAGCTGTCATGTGTGTGAGCACTG
AGCAGCAACCATGAAACTATAGCAGCAGCTTTGTTGGTTGTCATCTAATCTCCTATTTGCAAAT
CTTATTTAGCAACCTGGAGGGATATGATATTATCTGGTTGAGAATGTCTATCTCCAATTGTTAA
TTTGTTAAGACAAGCTCTAAATACACGGACCTTTCTTATGTAATAAAAGATGGAGCAAATCTAA
GTCCCAACCCCCTTTGTCCGTCCCATTATCTAGTCTCTACTCTATTCCCTTCTTTAGCGAAACC
AGCTCCACCTGCTTTGTATGTATCCTGGTGTTTACTTCATCATGATCTAAGGATCCTTACAGTG
GAACAGTAAGGAGTCAAGGGTATACTAACAAAGTGGAAAGTTCTACCTGTCAATAGTAGCTTCC
AAGTTTTAAATGTGAACAGCTCTGGAACTGTTCTTAGAATCAGAGAGCAATTATAGTGTTTTGA
ACACTAAGGAAGTAAGGATTTCTGATCAGATACTCAGACCTCAAACAAAAGGGCTTCAAATTGA
GGTTATGTACGTTACTGAGTTTCTGGAATGTTATCCAAGCAAACAGTACTACGAAAAGAAACGG
TCATCGGGTTGAAGAATTAAGCAC

Genomic sequence AGCTCAAGGAACTGCGGTGTTATCCTACAATCCACACAAATAAGGAAATAATGATAGGAATCTG
TTCCTTCCACGAAACATATAGTGATATAATATTGCCAACTTTACAGAAAAGGCAAAATATATTT
ATGTGCGTTTGGAAGTCCATAGCAACATGCCTTGCCCAGGAGTGTTACTTGGAGTAGCCCTGGC
TTGAAGAGGAATAGATTCTCTAATTAATAGTTTACTAGAACCTAGCATGTTCATTGCAATGAAT
TTAAGATAGTGAAAATATGGTTAACGTGCCATGATTTTTTTCTTCAAATGAAATATGAAGGAGG
AAGCAGATTTTAAAGCTACAAAAACATTAGACTTAACTTTGCTAACACTTCAAGGCCAAGAATA
ATGGGTACCAATATCTAACATGGTTGCTTAAAAGAATATGATATTACAAAAGTATAAGATCAAT
TGCTTTCTAGAAAGGATTAAATTACAAATGTGTATTTACTACCACTAGGTAACGATCTAGAGAT
AAATGTTTAATCACACAGCCAGGAACCAAAGCAAGTCCATCTGAGCAATGACCTAAGCCAAAAC
TAACTTGACCTGTTGAACCAAGTGCAGTCCAGGTCAACTTAATCTTGTCCTAGGCCCATCCTAG
GACTAACCAACTAGGAATAGACCCTACCAGCTTATCCCACCCAAACCCACTATTTCCCTGCTTT
GTTCACTTGTTAATCAAAAGGCCATTGTAGTACTATGATGCGGAGCAAGAGTTGAGCTTTATTT
GTGAGCAGGGTTATTCTGTTAGTAATAATTGATTGATTAGTTCATTCTAACAGACACACAAGAG
ATTATCCAATTTTATGATATGGGACAACTCAAGAAAAGAATAAATGCTATAAGGATTTACATGA
GCCCTGACCAACGATAAATAGCTTTATTGAAGGCCTTGAGGAGAACATGCTCATAGCACAATGG
TAAGACCTCCAGGTATGAGGCTGCCAACCAGGGCTCAAACCTGGGATCACGCAAAGAAAGGCCC
CTTGCTGTGTATGCCCCATGGTCGTGGCAGGTCACTATTCACTAAAGCGATAGCTGGCTTTCTG
GGCCTTTTCTTGACCTTAAAGCAATGCTTTCGGAACGTCTCTCCACTTGGATCGAGTGTTATTA
TTATTAACAATAATATTAAAGGCCTTGATGCCAGCATTCACTTGTTCAATGAACCAAATTAACC
ACTTCATTTTGAAGTGTTATATCATCTACATAAACATGATCATGTTAAATTTTAGTTCCTTCAG
TTTTTTATTCCCTCCTTTTCATATTATAAGACGTTTTGAGTTTGTCCTAAGTCAATTTCTTCAA
GTTTGACCAAGTTTATAGAAAAGCATAACATCTACAACACCAAACTAGTTTCATTAAATCCACC
ATCGAATATACTTTTAAGTATATTTGTTTTGTGCTGAAAATGTTGCTGCATTTTTCTATAAGCT
TGATTAAACTTGAAGAAGTTTTACTTAGAACAAACCCAAAATGACTAATAATATGGAACAGAGT
GAGCATTATGTTTACGGGTGGTAATGGGCTTGGCCCATGGGTCCTTTCACAGCCCAATTTTCTA
GGCTAAAATGTTGGGCCCTTTACCACCCTTAATTCTGTTAGGTGTCATACATCAGGAATTCAGG
ATTACTTGCAAAGTGGCAAGTTCTACCTTGTATTAAAATGCAGCTGTCATGTGTGTGAGCACTG
AGCAGCAACCATGAAACTATAGCAGCAGCTTTGTTGGTTGTCATCTAATCTCCTATTTGCAAAT
CTTATTTAGCAACCTGGAGGGATATGATATTATCTGGTTGAGAATGTCTATCTCCAATTGTTAA
TTTGTTAAGACAAGCTCTAAATACACGGACCTTTCTTATGTAATAAAAGATGGAGCAAATCTAA
GTCCCAACCCCCTTTGTCCGTCCCATTATCTAGTCTCTACTCTATTCCCTTCTTTAGCGAAACC
AGCTCCACCTGCTTTGTATGTATCCTGGTGTTTACTTCATCATGATCTAAGGATCCTTACAGTG
GAACAGTAAGGAGTCAAGGGTATACTAACAAAGTGGAAAGTTCTACCTGTCAATAGTAGCTTCC
AAGTTTTAAATGTGAACAGCTCTGGAACTGTTCTTAGAATCAGAGAGCAATTATAGTGTTTTGA
ACACTAAGGAAGTAAGGATTTCTGATCAGATACTCAGACCTCAAACAAAAGGGCTTCAAATTGA
GGTTATGTACGTTACTGAGTTTCTGGAATGTTATCCAAGCAAACAGTACTACGAAAAGAAACGG
TCATCGGGTTGAAGAATTAAGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.212638313
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017