Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G12900_circ_g.9 |
ID in PlantcircBase | ath_circ_002326 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 4394044-4394148 JBrowse» |
Reference genome | TAIR10.38 |
Type | u-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G12900 |
Parent gene annotation |
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 |
Parent gene strand | - |
Alternative splicing | AT1G12900_circ_g.1 AT1G12900_circ_g.2 AT1G12900_circ_g.3 AT1G12900_circ_g.4 AT1G12900_circ_g.5 AT1G12900_circ_g.6 AT1G12900_circ_g.7 AT1G12900_circ_g.8 |
Support reads | 21 |
Tissues | aerial |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G12900.2:1 AT1G12900.3:1 AT1G12900.5:1 AT1G12900.1:1 AT1G12900.4:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.194441666 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4394082-4394046(-) |
Potential amino acid sequence |
MSLFPSSVSKLLQVFLSSQDFETPLLFPLPRDLLPMSLFPSSVSKLLQVFLSSQDFETPLLFPL PRDLLPMSLFPSSVSKLLQVFLSSQDFETPLLFPLPRDLLPMSLFPSSVSKLL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |