Detail information of Zm00001d020500_circ_igg.1


General Information
CircRNA Name Zm00001d020500_circ_igg.1
ID in PlantcircBase zma_circ_009339
Alias zma_circ_0002542, ZmciR284
Organism Zea mays
Position chr7: 119412044-119420975  JBrowse»
Reference genome AGPv4.38
Type   igg-circRNA
Identification method find_circ, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d020500_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTAAACTTGGTTGTTTTGACCTTGTCTTAGGTGTTGATTACCCCATAACTTCAAAAAGGATG
AGCTCGAGCGACCGTGTCCTACCATCCTAGAATAAGgtgggcgaggcagccatggagttgatgg
tcggaggcagatctgcttggatgcaagtggagagggggctggcgcgccgcacgcggcacctacc
tccagcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.121804606
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019