Detail information of AT2G33435_circ_g.1


General Information
CircRNA Name AT2G33435_circ_g.1
ID in PlantcircBase ath_circ_016268
Alias NA
Organism Arabidpsis thaliana
Position chr2: 14166024-14169025  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene AT2G33435
Parent gene annotation RNA-binding (RRM/RBD/RNP motifs) family protein
Parent gene strand +
Alternative splicing AT2G33435_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G33435.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACGCCACAAGATGCCTCTGCTGCACTCTCCTTGGATGGCTGCTCCTTTGCGGGTTCAAACCTC
AAAATCCGACGCCCTAAAGACTATGTCAGGACAACAggaataaagcaggatgaacgaagttaat
aagcaaaaggaaaatcgtgatggacatgaaacacttgtaaatgaagaaggatctgctgctcgaa
caagacct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2911
Transcript exons: 14166024-14168796,14168888-14169025
GGAATAAAGCAGGATGAACGAAGTTAATAAGCAAAAGGAAAATCGTGATGGACATGAAACACTT
GTAAATGAAGAAGGATCTGCTGCTCGAACAAGACCTACAAGTGTTGAGGAGATTAGGCTAAGGA
GGAAGAGGAAAGAGTCCTTGGAAAATGTGAAGGAGGAAACTGTAGGAGCAGCACAGTTACTGGG
TTACGATCTTGTTGAAAAGGCTTCTGACTATCATGAGTCCAAGAATTTGAGGCGTGAAGAACAT
GTTGAAGACAGTTCAAGAAAGGAAAAAGAAGCCATTTCTAGATGTAGGGAAGAAAAAATAGAAA
AACCAATGAAAGAGGACCCTGTGGGAGCAGCTCAGTTACCCGATAAAAATCTTGTTGAGAAGGT
TCTTGACTGTCATGAGTCTGAAAAAGGGTATGATAGATCCGAGAAACTGAGTCATGAAGAGCTT
GTTATGGACAGCTCAAGAAAGAAAGAAGAGGCTATTTCTAGTTCTAGAGAAGAAAAACTTGATA
AACCAATAAAAGATGATCTTGTTGGAACAGCTCAGTTACTGGGTAATGATCTTGTTGAGAAGGT
TCCTGAATATCATGTGTCTGAAAAAGAGCATGATGGATCCAAGAACGTGAGGCGTGAAGAACGT
GTTAAGGACAGTTTAAGAAAGAAAGAGGACATAACTTCTAGTTCTAGGGATGAAACACCAATGA
AAGAGGATCATGTGGGAGCAGCTCAGTTACGGGGTAACGATATCGTTGAGAAGGTTTCTGACAA
TCATGCATCTGAAAAAGGGCATGATAAATCCAATAAAGTGAGGCGTGAAGAACATGTTAAGGAC
AGTTCAAGAAAGAAAGAAGACTACATTTCTAGTTTTAGAGAAGAAAAATCAAGAAAAGAGGATC
ATGTGGGAGCAGCTATGTTACTGGGTCACGATATTGTTGACAAGTTTTCTGACTATCATGCGTC
TGAAAAACGGCATGATAGGTCGAAGAAAGTGAGGCGTGACGAACATGTTAAGGAAAGCTCAAGA
AAGAAAGAAGACGCCACTTCTGGTTCTACGGAAGAAAAATCAATGAAAGAGGATCATGCGGGAG
CAGCTCAGTTACTGGGTCACGATATTGTTGAGAAGGTTTCTGACTATCATGCGTCTGAAAAAGG
GCATGATAGATCGACGAAAGTGAGGCGTGAAGAACGTGTTAAGGACAGCTCAAGAAAGAAAGAA
GATGCCACTTCTGGTTCTAGGGAAGAAAGAGTAGATAATTCAACGAAAGAGGACCCTGTTGGAG
CAGCTCAGTTACTAGGTAACGATTTTGTTGAGAAGGTTTCTGACTATCATACGTCTGAAAGAGG
GCATGAAAGATCCAAGAAAGTGAGGCGTGAAGAACGTGTTAAGGACAATTCAAGAAAGAAGGAA
GAGGCTATTTCTAGTTCTAGAGGAGAAAAACCGATTAAAGAGGATCATGTGGGAGCAGCTCAGT
TACTGGGTAACGATCTTGTTGAGATGGTTTCTGACTATCATGAAACTGAAAAAGGGTATGACAG
ATCCAAGAAATTGAGCCGTGAAGAGCGTGTTAAGGACAGTTCAAGAAAGAAGGAAGAGGCTATT
TCTAGTTCTAGAGAAGAAAACCTAGATAAACAAAAAAAAGACGAGTCTACTTCAAATAGAAAAA
GGAAAGCAGAAGGAGAGTGTTCTACAGCTGAAACAGAATCAATTGAAGAACATAGTAAGGATAG
ACGAGGAAAGAAAGAAGAAACTAATTCTAATTGTAGGGAGGAAAGACGAGATAAGAAGATGAAG
AAGGAAGACCTTGCTTCAAACAGAAAAATTGAAGGAGAAATCCCTACAACTGAAACAAAAACAA
TGACAGATAGAGATGGGCTTTGTAGTAAAAAGCGTCTTAGAAGTCTAGTTGTGGCAGACGTACC
TCGAGATGAAAGTAGTATAAAACCTGACAATGGAGACAAGAGAAAGAATCAAAATGGAAATCAT
AAGAAGAATAGGGAGATAAATATGTCAAAGAGGCATGATCCAGGAAAAGTGCACAGTGTTGAAG
TTTCAGAGCGATGGGAGAGAAGGGAACAACCAAAATCACGTCAACGCGACTTGAGAGAGAAAAG
AAGGAGATCAAGAAGTCGAGATCATGGGCAGGACAGACAGAAAAGGTCATCCCCCTTACCAAGG
GCTGAAAAGGCTACATCGCGTCATAAGAGAAACCATGAGGAGCGATCGGAAAATGTTGTCAAAG
ATAGGTCGGGAAAACATCATTGTAATGATAATGAAGACAAAGTGACAAGCACTGTAAGTAACAA
GTCTAGACGGTATAGTGCTTCCAAAAGTGAACTTGGTGGATATTCACCACGGAAAAGAAGGGAG
CAAGCATCTACCAAGGCTGCATCTCCACCTAATCTTTCTTCCGAGAAAAAAAGTGCTAAATGGG
GTCTTGCAGCTACTGTAACTGCTGGCATGTTTTCGGACTCAGTATTTTCTGGTCTCCAAGCAGC
AACTCAGACAGCATATCCTACCATCAGTGAGGCTTCCTTGACGCTTTTGAAGCCACTTATGGTT
ATGGATGCGCCTTTTAGGACGCCACCGGCAAGGCAGACCACTTCATTCGATTCTGTTCAACTGA
CAGAATCCACCAGACGTATGAGAAGACTTTACGCAGAAAATGTGCCTGATTCGGCCTCTGAGAA
GTCTCTGATTGAATGCTTCAATGGCTATATGTTATCTTCAGGGTCCAATCACATAAAAGGAAGT
GAACCATGTATTAGCTGTATTATAAACAAGGAAAAAAGTCAGGCGCTAGTGGAGTTCCTTACGC
CACAAGATGCCTCTGCTGCACTCTCCTTGGATGGCTGCTCCTTTGCGGGTTCAAACCTCAAAAT
CCGACGCCCTAAAGACTATGTCAGGACAACA

Genomic sequence GGAATAAAGCAGGATGAACGAAGTTAATAAGCAAAAGGAAAATCGTGATGGACATGAAACACTT
GTAAATGAAGAAGGATCTGCTGCTCGAACAAGACCTACAAGTGTTGAGGAGATTAGGCTAAGGA
GGAAGAGGAAAGAGTCCTTGGAAAATGTGAAGGAGGAAACTGTAGGAGCAGCACAGTTACTGGG
TTACGATCTTGTTGAAAAGGCTTCTGACTATCATGAGTCCAAGAATTTGAGGCGTGAAGAACAT
GTTGAAGACAGTTCAAGAAAGGAAAAAGAAGCCATTTCTAGATGTAGGGAAGAAAAAATAGAAA
AACCAATGAAAGAGGACCCTGTGGGAGCAGCTCAGTTACCCGATAAAAATCTTGTTGAGAAGGT
TCTTGACTGTCATGAGTCTGAAAAAGGGTATGATAGATCCGAGAAACTGAGTCATGAAGAGCTT
GTTATGGACAGCTCAAGAAAGAAAGAAGAGGCTATTTCTAGTTCTAGAGAAGAAAAACTTGATA
AACCAATAAAAGATGATCTTGTTGGAACAGCTCAGTTACTGGGTAATGATCTTGTTGAGAAGGT
TCCTGAATATCATGTGTCTGAAAAAGAGCATGATGGATCCAAGAACGTGAGGCGTGAAGAACGT
GTTAAGGACAGTTTAAGAAAGAAAGAGGACATAACTTCTAGTTCTAGGGATGAAACACCAATGA
AAGAGGATCATGTGGGAGCAGCTCAGTTACGGGGTAACGATATCGTTGAGAAGGTTTCTGACAA
TCATGCATCTGAAAAAGGGCATGATAAATCCAATAAAGTGAGGCGTGAAGAACATGTTAAGGAC
AGTTCAAGAAAGAAAGAAGACTACATTTCTAGTTTTAGAGAAGAAAAATCAAGAAAAGAGGATC
ATGTGGGAGCAGCTATGTTACTGGGTCACGATATTGTTGACAAGTTTTCTGACTATCATGCGTC
TGAAAAACGGCATGATAGGTCGAAGAAAGTGAGGCGTGACGAACATGTTAAGGAAAGCTCAAGA
AAGAAAGAAGACGCCACTTCTGGTTCTACGGAAGAAAAATCAATGAAAGAGGATCATGCGGGAG
CAGCTCAGTTACTGGGTCACGATATTGTTGAGAAGGTTTCTGACTATCATGCGTCTGAAAAAGG
GCATGATAGATCGACGAAAGTGAGGCGTGAAGAACGTGTTAAGGACAGCTCAAGAAAGAAAGAA
GATGCCACTTCTGGTTCTAGGGAAGAAAGAGTAGATAATTCAACGAAAGAGGACCCTGTTGGAG
CAGCTCAGTTACTAGGTAACGATTTTGTTGAGAAGGTTTCTGACTATCATACGTCTGAAAGAGG
GCATGAAAGATCCAAGAAAGTGAGGCGTGAAGAACGTGTTAAGGACAATTCAAGAAAGAAGGAA
GAGGCTATTTCTAGTTCTAGAGGAGAAAAACCGATTAAAGAGGATCATGTGGGAGCAGCTCAGT
TACTGGGTAACGATCTTGTTGAGATGGTTTCTGACTATCATGAAACTGAAAAAGGGTATGACAG
ATCCAAGAAATTGAGCCGTGAAGAGCGTGTTAAGGACAGTTCAAGAAAGAAGGAAGAGGCTATT
TCTAGTTCTAGAGAAGAAAACCTAGATAAACAAAAAAAAGACGAGTCTACTTCAAATAGAAAAA
GGAAAGCAGAAGGAGAGTGTTCTACAGCTGAAACAGAATCAATTGAAGAACATAGTAAGGATAG
ACGAGGAAAGAAAGAAGAAACTAATTCTAATTGTAGGGAGGAAAGACGAGATAAGAAGATGAAG
AAGGAAGACCTTGCTTCAAACAGAAAAATTGAAGGAGAAATCCCTACAACTGAAACAAAAACAA
TGACAGATAGAGATGGGCTTTGTAGTAAAAAGCGTCTTAGAAGTCTAGTTGTGGCAGACGTACC
TCGAGATGAAAGTAGTATAAAACCTGACAATGGAGACAAGAGAAAGAATCAAAATGGAAATCAT
AAGAAGAATAGGGAGATAAATATGTCAAAGAGGCATGATCCAGGAAAAGTGCACAGTGTTGAAG
TTTCAGAGCGATGGGAGAGAAGGGAACAACCAAAATCACGTCAACGCGACTTGAGAGAGAAAAG
AAGGAGATCAAGAAGTCGAGATCATGGGCAGGACAGACAGAAAAGGTCATCCCCCTTACCAAGG
GCTGAAAAGGCTACATCGCGTCATAAGAGAAACCATGAGGAGCGATCGGAAAATGTTGTCAAAG
ATAGGTCGGGAAAACATCATTGTAATGATAATGAAGACAAAGTGACAAGCACTGTAAGTAACAA
GTCTAGACGGTATAGTGCTTCCAAAAGTGAACTTGGTGGATATTCACCACGGAAAAGAAGGGAG
CAAGCATCTACCAAGGCTGCATCTCCACCTAATCTTTCTTCCGAGAAAAAAAGTGCTAAATGGG
GTCTTGCAGCTACTGTAACTGCTGGCATGTTTTCGGACTCAGTATTTTCTGGTCTCCAAGCAGC
AACTCAGACAGCATATCCTACCATCAGTGAGGCTTCCTTGACGCTTTTGAAGCCACTTATGGTT
ATGGATGCGCCTTTTAGGACGCCACCGGCAAGGCAGACCACTTCATTCGATTCTGTTCAACTGA
CAGAATCCACCAGACGTATGAGAAGACTTTACGCAGAAAATGTGCCTGATTCGGCCTCTGAGAA
GTCTCTGATTGAATGCTTCAATGGCTATATGTTATCTTCAGGGTCCAATCACATAAAAGGAAGT
GAACCATGTATTAGCTGTATTGTAAGTTTCTGTCATGTGACTTCCTTATTCATATCACTCTTGT
TATGCTTGTGAATTATATCACCTGATAGTATTTGTCCTTTAAATGCAGATAAACAAGGAAAAAA
GTCAGGCGCTAGTGGAGTTCCTTACGCCACAAGATGCCTCTGCTGCACTCTCCTTGGATGGCTG
CTCCTTTGCGGGTTCAAACCTCAAAATCCGACGCCCTAAAGACTATGTCAGGACAACA
Conservation Information
Conserved circRNAs NA
PMCS 0.172730903
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017