Detail information of BGIOSGA011065_circ_g.3


General Information
CircRNA Name BGIOSGA011065_circ_g.3
ID in PlantcircBase osi_circ_004701
Alias 3:9098735|9100596
Organism Oryza sativa ssp. indica
Position chr3: 9098735-9100596  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA011065
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA011065-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGATTCCAATGCTTTGCAGTGCTTTCGGTTCGGAACCTTCAGTGCTGCACCCTGATTCTTAC
CCCTGCCTTTCCTCTGTTTTTTCTGAGGGCTTTCATcacatcctgagaagaaaacttgcttttg
ttttgtttgtcatgaaagttagccaaatgttttcctggatctgcatgctctgcagaattctgct
cagtggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACATCCTGAGAAGAAAACTTGCTTTTGTTTTGTTTGTCATGAAAGTTAGCCAAATGTTTTCCT
GGATCTGCATGCTCTGCAGAATTCTGCTCAGTGGTACTAGTGCCAAGAAAAGATTTGTCGGCAA
TTAGCCATTTGTTACTCCAGTGAATTGGCATAGTGACCTGTAACACACATACACACACAGATGT
TCAGTCGCATTAGACAAACCACCCTAAGGCGGACCACAAAAGCACAAAGGTGAGATACATTATG
GAACCAGATGAACAAAATATATGTTTTTATATAGACACACCTCCAGTTCGTACAAAACATGAAC
AGGACATAAAGGTGGGTCTCTTTCAAAAGCACAAAGTGAATCCATATCCTCATCCTCAACATTA
AGAATATCTTGGCCAGCACCTTTGTGTATTTTCCGAGAAGCAAAAAATGGATGCATTTTCTTTC
CAGATGATAACCTCCGATTTTCCTGGCAATGAATAATATGAACTTTTCAGACAAGAACAATCTT
GGAATCAACAGAAGAGTAAAACAGCAACCATGACTTTTTTTTTCCCGAGGAACACTCAAATTGA
GTATATTAAGATCCAAGACGTTGTAAAACATTGAAGGAGGATGATTCACACAGACAGAAGTTAA
ACTTATTTTAATACCCGACTGTACTGCTTAACAATAATAAGACAATATTTCTTAAACAATTGTT
GTTGTTTTAAGAAAATGTATGCAATTCAGAGAACATTATAATGTAGTACAAAGCCTAAATTCAA
TATAATAAATATTATAAATATAAACTTGTGCAGGGCCCAAAAGCCATGAACAAATATACAGTAT
TCAACCAAACATAAGGCAACCACCGCAACCACAAAGGACAAGTATCCAATGTCTGAATTATTAG
TAACATTTTACGTTTTACCTTTGCTTGAGATGACAAGGTGGGCATTCAAATGACTACAGATCTA
AACTTGCAATAAGCATGATAGAACACCCAATTTTCAATTGATTATCGAATAGTCAGAATATTCT
TAATGAATTATTGAGACAATAGTCAAAAGGAAGGTATAAAACAAAAAGACCAGAAGACTACATA
CAGTATCTCAAATCAAACATTGGCATGGGGCATACCTCTGCAGCTATATTTGCCTCTGACCTTA
GATCAACTATCAACTGTGGCTTATCTTCATTGTCTAGTGCATCAACATTATCATTAACCGGACT
TGCTTCAGATGGGCCGGTCACCGAATCAATATCAACTGATGTGGGTGATTTTTGAGGCAAGACA
GCTTGAGTCTGACTGCTGCGTAGTTGCTGACAACTTTCATGACCTGCACAAGCAAAAGAAAAGC
TCATTGCACTTTTTCAAAAGTAGAGTAGGTAGAGATACAATCGCAGCTAAACAATGGCATTGAG
TTAACTTCAATTGAGCAGCCATGGCATATATTATTCTTTATATGCACAACAGCATGTGCAAGCA
AATGACTATAAACTCAGACTGTTTTGACACTCAATAGTTGGATATTATTTTTTGTTAAACTCAA
ATTGTCGAATGCACGGATTATTTAATACTAATAGTGCGAATGGTGTTCAATATGTGTTTCCTGA
ACACTTGGTAGAAGTGTTTTTTTTTCAATTGTACAAACCAACATGGTAGGGTACTTCTACAGAG
AAACTCAACAGTATCAAATCACCAACAATATTCACACATGCATGCGTGCGCGCGAGCACAGAAA
TGTGTGTGTGGTGATGGCTAAGTGCTCACCAACAGTAGATTCCAATGCTTTGCAGTGCTTTCGG
TTCGGAACCTTCAGTGCTGCACCCTGATTCTTACCCCTGCCTTTCCTCTGTTTTTTCTGAGGGC
TTTCAT
Conservation Information
Conserved circRNAs osa_circ_018985*
PMCS
Functional Information
Coding potential Y
Potential coding position 9099176-9100539(-)
9100054-9098741(+)
9100508-9098863(+)
Potential amino acid sequence MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK
SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVMKALRKNRGKAGVRIRVQH*(-)
MTNSRFQCFAVLSVRNLQCCTLILTPAFPLFFLRAFITS*(+)
MLCSAFGSEPSVLHPDSYPCLSSVFSEGFHHILRRKLAFVLFVMKVSQMFSWICMLCRILLSGT
SAKKRFVGN*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021