Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA011065_circ_g.3 |
ID in PlantcircBase | osi_circ_004701 |
Alias | 3:9098735|9100596 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 9098735-9100596 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA011065 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA011065-TA:4 |
Conservation Information | |
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Conserved circRNAs | osa_circ_018985* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9099176-9100539(-) 9100054-9098741(+) 9100508-9098863(+) |
Potential amino acid sequence |
MHPFFASRKIHKGAGQDILNVEDEDMDSLCAFERDPPLCPVHVLYELEVTMPIHWSNKWLIADK SFLGTSTTEQNSAEHADPGKHLANFHDKQNKSKFSSQDVMKALRKNRGKAGVRIRVQH*(-) MTNSRFQCFAVLSVRNLQCCTLILTPAFPLFFLRAFITS*(+) MLCSAFGSEPSVLHPDSYPCLSSVFSEGFHHILRRKLAFVLFVMKVSQMFSWICMLCRILLSGT SAKKRFVGN*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |