Detail information of AT2G03680_circ_g.1


General Information
CircRNA Name AT2G03680_circ_g.1
ID in PlantcircBase ath_circ_012698
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1120879-1121342  JBrowse»
Reference genome TAIR10.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene AT2G03680
Parent gene annotation Protein SPIRAL1
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedlings
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G03680.3:1
AT2G03680.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTATTCTGATTGTGAATTTTAAGCAGCATTCACAATTGAATTGAGTCTTCACTTTGTTCAGC
TCTGAATCTATCATCTCTGAATGTTGGCAAGTTATAgtttgtttcttaacccctaaaattcctc
cagatcgctttgatttcgtttctctgatgtcttagacgaagttagatcgtagattcctatgttt
tgattcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 464
Transcript exons: 1120879-1121342
GTTTGTTTCTTAACCCCTAAAATTCCTCCAGATCGCTTTGATTTCGTTTCTCTGATGTCTTAGA
CGAAGTTAGATCGTAGATTCCTATGTTTTGATTCCTCGATCATGCTTCGAATTATGGTGTTTTT
ATCCTCAATTTTTGGAGATTTGGTTTCTACGGATTTTGTAGATTCAGGAATTTAGAAATGGTGA
TTCGATTTCAATGGTTTTAGATCTGATTCAGTCTTCACTCTTGTTCCACTATTTTGAAAATTGG
CTAAAAACTAGGTTTCGTCGTCTAATTCTCCCGACGTTCTTCGAGAAATGTGAACTTTGAGGTG
AAGATTTTGCGTTAGCATATGTGGTTTTGTATAATTGACGTTGCTACTATTCTGATTGTGAATT
TTAAGCAGCATTCACAATTGAATTGAGTCTTCACTTTGTTCAGCTCTGAATCTATCATCTCTGA
ATGTTGGCAAGTTATA

Genomic sequence GTTTGTTTCTTAACCCCTAAAATTCCTCCAGATCGCTTTGATTTCGTTTCTCTGATGTCTTAGA
CGAAGTTAGATCGTAGATTCCTATGTTTTGATTCCTCGATCATGCTTCGAATTATGGTGTTTTT
ATCCTCAATTTTTGGAGATTTGGTTTCTACGGATTTTGTAGATTCAGGAATTTAGAAATGGTGA
TTCGATTTCAATGGTTTTAGATCTGATTCAGTCTTCACTCTTGTTCCACTATTTTGAAAATTGG
CTAAAAACTAGGTTTCGTCGTCTAATTCTCCCGACGTTCTTCGAGAAATGTGAACTTTGAGGTG
AAGATTTTGCGTTAGCATATGTGGTTTTGTATAATTGACGTTGCTACTATTCTGATTGTGAATT
TTAAGCAGCATTCACAATTGAATTGAGTCTTCACTTTGTTCAGCTCTGAATCTATCATCTCTGA
ATGTTGGCAAGTTATA
Conservation Information
Conserved circRNAs NA
PMCS 0.171168013
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017