Plant Circular RNA Database

Detail information of Os07g0134101_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os07g0134101_circ_g.2
					
						ID in PlantcircBase
						osa_circ_032699
					
						Alias
						Os07circ00949
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 1791467-1792301  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl
					
						Parent gene
						
							Os07g0134101						
					
						Parent gene annotation
						
							Hypothetical protein. (Os07t0134101-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						3/2
					
						Tissues
						leaf and panicle/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0134000-03:2
Os07t0134000-02:2
Os07t0134101-00:2
Os07t0134000-03:2
Os07t0134000-02:2

General Information
CircRNA Name	Os07g0134101_circ_g.2
ID in PlantcircBase	osa_circ_032699
Alias	Os07circ00949
Organism	Oryza sativa
Position	chr7: 1791467-1792301 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ei-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl
Parent gene	Os07g0134101
Parent gene annotation	Hypothetical protein. (Os07t0134101-00)
Parent gene strand	+
Alternative splicing	NA
Support reads	3/2
Tissues	leaf and panicle/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0134000-03:2 Os07t0134000-02:2 Os07t0134101-00:2 Os07t0134000-03:2 Os07t0134000-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATTTGGATGCCAGCAAATATGATCATGTTGGTCGTGTCAGATGCCAAGCAGGCTGCGTCGTGG
CCGTTGCGATGGAACCAGTTGGACCGTTTGATCGCActgaatttctatgaggacattggagtag
gagtatgcaaaggcaatgtcaccaagtgactgaaaagttctccagattttctcacttgcagaca
catccact

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 204
Transcript exons: 1791467-1791566,1792198-1792301
CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA
GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTGGAGGATTTGGATGCCAGCAAATATGAT
CATGTTGGTCGTGTCAGATGCCAAGCAGGCTGCGTCGTGGCCGTTGCGATGGAACCAGTTGGAC
CGTTTGATCGCA
Transcript length: 223
Transcript exons: 1791467-1791578,1792191-1792301
CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA
GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTCCAACAGTCACCTGCGAGAGGAGGATTT
GGATGCCAGCAAATATGATCATGTTGGTCGTGTCAGATGCCAAGCAGGCTGCGTCGTGGCCGTT
GCGATGGAACCAGTTGGACCGTTTGATCGCA
Transcript length: 299
Transcript exons: 1791467-1791603,1792140-1792301
CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA
GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTCCAACAGTCACCCCTGTGAGGGTTGCCT
CGGGGTGGGATGACAGCAGCGACAATGGAGAGCCACCAAATTTTGTGAAAATTCGGCAGCTGCG
AGAGGAGGATTTGGATGCCAGCAAATATGATCATGTTGGTCGTGTCAGATGCCAAGCAGGCTGC
GTCGTGGCCGTTGCGATGGAACCAGTTGGACCGTTTGATCGCA
Transcript length: 358
Transcript exons: 1791467-1791609,1792087-1792301
CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA
GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTCCAACAGTCACCCCTGTGAGGGTTGCCT
CGGGGTGGGCCCCACCTGCAATTTTTGCAATGGAGAGGCCAAGGCCAATGGTTGAGTAGGCCAG
TGACATGACAGCAGCGACAATGGAGAGCCACCAAATTTTGTGAAAATTCGGCAGCTGCGAGAGG
AGGATTTGGATGCCAGCAAATATGATCATGTTGGTCGTGTCAGATGCCAAGCAGGCTGCGTCGT
GGCCGTTGCGATGGAACCAGTTGGACCGTTTGATCGCA
						
					

						Genomic sequence
						
							CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA
GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTCCAACAGTCACCCCTGTGAGGGTTGCCT
CGGGGTGGGCCCCACCTGCAGAGAACCACATGAATTCAATCATACAAATGCACTGCATCATGGC
CCCCCCCCCCCCCCAACATGGATGATACAAACAAAAACCAACATGTCAAGTGTCCCAGGCTATG
TATATACATTTTTGCACGCCTCAATTTTGTTTCTGCCCTACCAAAAATGTATATTTATAATATC
AGCATCATATCTTCTTTGTTTTGTCCATTTCCCTTGTGAATTAATTGCATGATGTGTACACGGG
AACAGAATAGATGAAGTAAATTAAAGACTTGGTCTCCATTTTTGGACCGAGGAGGACTTGGGTC
TCTCCTTTGGAAAGTAGCGGTTTTACAAGAATTTTGTCGGATTTTCACAGGAACCAGTTTCAGT
TCTATGTGCGGCGAGAACCAGAAAAAAATATTTCTTGCAATCCTAAGAATAAGATAGCCACACA
AATTTGTTTTTGTCATCCATATATATCAGATGGTATATATTTACCTGCAATTTTTGCAATGGAG
AGGCCAAGGCCAATGGTTGAGTAGGCCAGTGACATGACAGCAGCGACAATGGAGAGCCACCAAA
TTTTGTGAAAATTCGGCAGCTGCGAGAGGAGGATTTGGATGCCAGCAAATATGATCATGTTGGT
CGTGTCAGATGCCAAGCAGGCTGCGTCGTGGCCGTTGCGATGGAACCAGTTGGACCGTTTGATC
GCA
						
					

			
		

Sequences
Splice junction sequence	GATTTGGATGCCAGCAAATATGATCATGTTGGTCGTGTCAGATGCCAAGCAGGCTGCGTCGTGG CCGTTGCGATGGAACCAGTTGGACCGTTTGATCGCActgaatttctatgaggacattggagtag gagtatgcaaaggcaatgtcaccaagtgactgaaaagttctccagattttctcacttgcagaca catccact
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 204 Transcript exons: 1791467-1791566,1792198-1792301 CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTGGAGGATTTGGATGCCAGCAAATATGAT CATGTTGGTCGTGTCAGATGCCAAGCAGGCTGCGTCGTGGCCGTTGCGATGGAACCAGTTGGAC CGTTTGATCGCA Transcript length: 223 Transcript exons: 1791467-1791578,1792191-1792301 CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTCCAACAGTCACCTGCGAGAGGAGGATTT GGATGCCAGCAAATATGATCATGTTGGTCGTGTCAGATGCCAAGCAGGCTGCGTCGTGGCCGTT GCGATGGAACCAGTTGGACCGTTTGATCGCA Transcript length: 299 Transcript exons: 1791467-1791603,1792140-1792301 CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTCCAACAGTCACCCCTGTGAGGGTTGCCT CGGGGTGGGATGACAGCAGCGACAATGGAGAGCCACCAAATTTTGTGAAAATTCGGCAGCTGCG AGAGGAGGATTTGGATGCCAGCAAATATGATCATGTTGGTCGTGTCAGATGCCAAGCAGGCTGC GTCGTGGCCGTTGCGATGGAACCAGTTGGACCGTTTGATCGCA Transcript length: 358 Transcript exons: 1791467-1791609,1792087-1792301 CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTCCAACAGTCACCCCTGTGAGGGTTGCCT CGGGGTGGGCCCCACCTGCAATTTTTGCAATGGAGAGGCCAAGGCCAATGGTTGAGTAGGCCAG TGACATGACAGCAGCGACAATGGAGAGCCACCAAATTTTGTGAAAATTCGGCAGCTGCGAGAGG AGGATTTGGATGCCAGCAAATATGATCATGTTGGTCGTGTCAGATGCCAAGCAGGCTGCGTCGT GGCCGTTGCGATGGAACCAGTTGGACCGTTTGATCGCA
Genomic sequence	CTGAATTTCTATGAGGACATTGGAGTAGGAGTATGCAAAGGCAATGTCACCAAGTGACTGAAAA GTTCTCCAGATTTTCTCACTTGCAGACACATCCACTCCAACAGTCACCCCTGTGAGGGTTGCCT CGGGGTGGGCCCCACCTGCAGAGAACCACATGAATTCAATCATACAAATGCACTGCATCATGGC CCCCCCCCCCCCCCAACATGGATGATACAAACAAAAACCAACATGTCAAGTGTCCCAGGCTATG TATATACATTTTTGCACGCCTCAATTTTGTTTCTGCCCTACCAAAAATGTATATTTATAATATC AGCATCATATCTTCTTTGTTTTGTCCATTTCCCTTGTGAATTAATTGCATGATGTGTACACGGG AACAGAATAGATGAAGTAAATTAAAGACTTGGTCTCCATTTTTGGACCGAGGAGGACTTGGGTC TCTCCTTTGGAAAGTAGCGGTTTTACAAGAATTTTGTCGGATTTTCACAGGAACCAGTTTCAGT TCTATGTGCGGCGAGAACCAGAAAAAAATATTTCTTGCAATCCTAAGAATAAGATAGCCACACA AATTTGTTTTTGTCATCCATATATATCAGATGGTATATATTTACCTGCAATTTTTGCAATGGAG AGGCCAAGGCCAATGGTTGAGTAGGCCAGTGACATGACAGCAGCGACAATGGAGAGCCACCAAA TTTTGTGAAAATTCGGCAGCTGCGAGAGGAGGATTTGGATGCCAGCAAATATGATCATGTTGGT CGTGTCAGATGCCAAGCAGGCTGCGTCGTGGCCGTTGCGATGGAACCAGTTGGACCGTTTGATC GCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007010* osi_circ_017137 						
					
						PMCS
						0.366838313

Conservation Information
Conserved circRNAs	osi_circ_007010* osi_circ_017137
PMCS	0.366838313

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1792210-1791520(+)
1792230-1792241(-)
						
						Potential amino acid sequence
						
							MPANMIMLVVSDAKQAASWPLRWNQLDRLIALNFYEDIGVGVCKGNVTK*(+)
MIIFAGIQILLSQLPNFHKIWWLSIVAAVMSLAYSTIGLGLSIAKIAGGAHPEATLTGVTVGVD
VSASEKIWRTFQSLGDIAFAYSYSNVLIEIQCDQTVQLVPSQRPRRSLLGI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	1792210-1791520(+) 1792230-1792241(-)
Potential amino acid sequence	MPANMIMLVVSDAKQAASWPLRWNQLDRLIALNFYEDIGVGVCKGNVTK(+) MIIFAGIQILLSQLPNFHKIWWLSIVAAVMSLAYSTIGLGLSIAKIAGGAHPEATLTGVTVGVD VSASEKIWRTFQSLGDIAFAYSYSNVLIEIQCDQTVQLVPSQRPRRSLLGI(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0134101_circ_g.2

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