Plant Circular RNA Database

Detail information of Os02g0132600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0132600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_012999
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 1711480-1713718  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0132600						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os02t0132600-01);Hypothetical c
onserved gene. (Os02t0132600-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0132600-02:5
Os02t0132600-01:5

General Information
CircRNA Name	Os02g0132600_circ_g.1
ID in PlantcircBase	osa_circ_012999
Alias	NA
Organism	Oryza sativa
Position	chr2: 1711480-1713718 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0132600
Parent gene annotation	Conserved hypothetical protein. (Os02t0132600-01);Hypothetical c onserved gene. (Os02t0132600-02)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0132600-02:5 Os02t0132600-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCTCTCTGAAATATCCAAGCATGATAGCATTATACAGGCTTACAGTGGATATATCCCCAGACTC
TTCTGCATCTGTGAGTATACGGTAAGCACCTTCAAAttagggtgattgtgctgaacacagtaca
gaagtactctactgcacccgtcaaaccacatgtttgagtcaccaagctcttccagaagttgata
cagtctat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 617
Transcript exons: 1711480-1711607,1711720-1711884,1712068-1712172,1713021-
1713140,1713620-1713718
TTAGGGTGATTGTGCTGAACACAGTACAGAAGTACTCTACTGCACCCGTCAAACCACATGTTTG
AGTCACCAAGCTCTTCCAGAAGTTGATACAGTCTATCCAGCTCACCTTTTGTTTGGGTATTCTC
AATCAGGGCTATTGCTGATTTTGGCTCAAGGTGGCATCCAGATTGCTTGATTTCATCATACATG
ATAAGTCCATCTAATACCTTCCCATTTGATGCAAGAGCTCCTATAAGCGCACTCTTAATTTCAT
TGAGGTACTTAGGTGGTATTTCCTTGTTTTCGAGAACCTGTTTAGCCATGTCAAAATTCCCAAG
TCTTGCATATGCACTAACTAGTGACATATATATATGCTTGGACATGTGTATTCCATCTTGCCGT
AATTGATCAAGATACTCAGAGATTTTCTCTTCGAACTCACAGTTAAATATCAAATAACAGTATG
TTTCAGAATCTGGTTTTACTCCGGCAATCTGCATTTGCGCCATGACCATCTGTGCTCCATTGTG
GTTTTTCTCTCTGAAATATCCAAGCATGATAGCATTATACAGGCTTACAGTGGATATATCCCCA
GACTCTTCTGCATCTGTGAGTATACGGTAAGCACCTTCAAA
						
					

						Genomic sequence
						
							TTAGGGTGATTGTGCTGAACACAGTACAGAAGTACTCTACTGCACCCGTCAAACCACATGTTTG
AGTCACCAAGCTCTTCCAGAAGTTGATACAGTCTATCCAGCTCACCTTTTGTTTGGGTATTCTC
CTGCAGAAAAAAAAATACTATTAAGGATGGAGACTAGAACAAGTGGTTCTCAAACGTGTAGGCA
CAACCCATTTCTTCATTAGAAGTAAACATACGTAACAGTTTTACTTACAATCAGGGCTATTGCT
GATTTTGGCTCAAGGTGGCATCCAGATTGCTTGATTTCATCATACATGATAAGTCCATCTAATA
CCTTCCCATTTGATGCAAGAGCTCCTATAAGCGCACTCTTAATTTCATTGAGGTACTTAGGTGG
TATTTCCTTGTTTTCGAGAACCTAAGAAAGCAGCAAAGGTTTTCAGTAGCAAAATAGAACAAGT
ACAACATTAGCATCTTCGTAGTAATAATAATAGCCATTAACTTATGTAATCTAATTCAGAAAAC
ACGAGTACATGTGTGAGATCTGGCACCTGAAGGTGCAGCAAAATTCAAAGAGAATTATGATCGG
CAAGCACATTACCTGTTTAGCCATGTCAAAATTCCCAAGTCTTGCATATGCACTAACTAGTGAC
ATATATATATGCTTGGACATGTGTATTCCATCTTGCCGTAATTGATCAAGATACTGTAAACAAT
TCAACAGCCAGTGCTTATCCCAACAGAAACTATAAATTGAAAGGGGTTTAAAACATGAAATTCT
AATGTCAGTGTAAACTATGGTAAAGAATCATGCCAATTGTTCAATAGTATATGGCGTTTTAGAC
ATTGGCAAACCCTCCAATATGCAACTTCAAAAATTACTTTAAATAAGTGTATTAGTAAAAAAAA
ATTAAGATTTATATGACAACTCTAATTGCACCATTTCTGAAATTCCACATGACCAATCTAAATA
TTTTTTTACACAATGATGGTCAAAGATAAAGAAGTTTGACTACGCGTCTTTTAAAATGTCAGAT
AATTCCTCCATTTTCCTTTACTTGTCACAGTTGACCATAATTTTGTGTCTGAGAATACTTGGCA
CTATACATTTGTCACAGTGGCATTCCCTATTTTGTCCTTTGAGGACCAATCATAAATTTAACAA
TATGACATTGATACAAGTAATCAGAAATATCTAGAGTGTTCTTTCAAAGTTTCGATTATACATA
ACGAAAACATATTCCACTCACCTAGGAGCTTTGGTTATTTTAGGAGATAAAAGTTGATTGCATT
GATATGTGTACCATAGTCAACAATGAGACAATTAAACAGAAAAGGAGGGAGCATTTCCGAACAG
AGTAGGCATGTTAGTATGTAATGGAAGATGCGACATGCTGCATGATGATATATCCAACAGAATT
TAACAATGCAAATAGAATTAATTACTTGGGGATATAATTTCACTAGGTGTTCTTTCAAGAACAT
ATACAGTTGCCTCTCTATTTGAAACACACACAAAAATGGTAATAATAAACAATCAGGTATGTGA
CAAACCTCAGAGATTTTCTCTTCGAACTCACAGTTAAATATCAAATAACAGTATGTTTCAGAAT
CTGGTTTTACTCCGGCAATCTGCATTTGCGCCATGACCATCTGTGCTCCATTGTGGTTTTTCTA
TATAGAAACATAGCGAATTTAAAGGGAGAAAGGCACTAAGGCACAAACAATCTGGAATAATAGT
CTTTAAATCTTACTACAGTATGTAAATATGGTCTTTTGCTAATAATAAAAAAATCATAACTACT
GGGTAAGTCCAGCAGTGTTTCCCCTCAAAAAAAATTTTGAAATTTCATGCCGTTTTCATACTGA
ATAGTTACAGTGGTTGCTTATTCGAAACTGTTGCGCATTTGTACTTGAGGGAAGAGGTTTGGAA
AATCTCAACAAAAAAAAACAAGCATGTGTCATCTCTTATGTGTTTATGCATTTCTACTGACCAG
GCATGATGTAAAATCGAGTCAGCTAAAGTTGAGCAAGTATGCTGACAATAGTTAATAGGAGATC
CATCATTTTTTGAATAATTAAAATGGACATATGGATTGTATGGTAACTGAGGAAAACAAATCAA
AAGAACAACAGATAACCCGAGAGTTTACCTCTCTGAAATATCCAAGCATGATAGCATTATACAG
GCTTACAGTGGATATATCCCCAGACTCTTCTGCATCTGTGAGTATACGGTAAGCACCTTCAAA
						
					

			
		

Sequences
Splice junction sequence	CCTCTCTGAAATATCCAAGCATGATAGCATTATACAGGCTTACAGTGGATATATCCCCAGACTC TTCTGCATCTGTGAGTATACGGTAAGCACCTTCAAAttagggtgattgtgctgaacacagtaca gaagtactctactgcacccgtcaaaccacatgtttgagtcaccaagctcttccagaagttgata cagtctat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 617 Transcript exons: 1711480-1711607,1711720-1711884,1712068-1712172,1713021- 1713140,1713620-1713718 TTAGGGTGATTGTGCTGAACACAGTACAGAAGTACTCTACTGCACCCGTCAAACCACATGTTTG AGTCACCAAGCTCTTCCAGAAGTTGATACAGTCTATCCAGCTCACCTTTTGTTTGGGTATTCTC AATCAGGGCTATTGCTGATTTTGGCTCAAGGTGGCATCCAGATTGCTTGATTTCATCATACATG ATAAGTCCATCTAATACCTTCCCATTTGATGCAAGAGCTCCTATAAGCGCACTCTTAATTTCAT TGAGGTACTTAGGTGGTATTTCCTTGTTTTCGAGAACCTGTTTAGCCATGTCAAAATTCCCAAG TCTTGCATATGCACTAACTAGTGACATATATATATGCTTGGACATGTGTATTCCATCTTGCCGT AATTGATCAAGATACTCAGAGATTTTCTCTTCGAACTCACAGTTAAATATCAAATAACAGTATG TTTCAGAATCTGGTTTTACTCCGGCAATCTGCATTTGCGCCATGACCATCTGTGCTCCATTGTG GTTTTTCTCTCTGAAATATCCAAGCATGATAGCATTATACAGGCTTACAGTGGATATATCCCCA GACTCTTCTGCATCTGTGAGTATACGGTAAGCACCTTCAAA
Genomic sequence	TTAGGGTGATTGTGCTGAACACAGTACAGAAGTACTCTACTGCACCCGTCAAACCACATGTTTG AGTCACCAAGCTCTTCCAGAAGTTGATACAGTCTATCCAGCTCACCTTTTGTTTGGGTATTCTC CTGCAGAAAAAAAAATACTATTAAGGATGGAGACTAGAACAAGTGGTTCTCAAACGTGTAGGCA CAACCCATTTCTTCATTAGAAGTAAACATACGTAACAGTTTTACTTACAATCAGGGCTATTGCT GATTTTGGCTCAAGGTGGCATCCAGATTGCTTGATTTCATCATACATGATAAGTCCATCTAATA CCTTCCCATTTGATGCAAGAGCTCCTATAAGCGCACTCTTAATTTCATTGAGGTACTTAGGTGG TATTTCCTTGTTTTCGAGAACCTAAGAAAGCAGCAAAGGTTTTCAGTAGCAAAATAGAACAAGT ACAACATTAGCATCTTCGTAGTAATAATAATAGCCATTAACTTATGTAATCTAATTCAGAAAAC ACGAGTACATGTGTGAGATCTGGCACCTGAAGGTGCAGCAAAATTCAAAGAGAATTATGATCGG CAAGCACATTACCTGTTTAGCCATGTCAAAATTCCCAAGTCTTGCATATGCACTAACTAGTGAC ATATATATATGCTTGGACATGTGTATTCCATCTTGCCGTAATTGATCAAGATACTGTAAACAAT TCAACAGCCAGTGCTTATCCCAACAGAAACTATAAATTGAAAGGGGTTTAAAACATGAAATTCT AATGTCAGTGTAAACTATGGTAAAGAATCATGCCAATTGTTCAATAGTATATGGCGTTTTAGAC ATTGGCAAACCCTCCAATATGCAACTTCAAAAATTACTTTAAATAAGTGTATTAGTAAAAAAAA ATTAAGATTTATATGACAACTCTAATTGCACCATTTCTGAAATTCCACATGACCAATCTAAATA TTTTTTTACACAATGATGGTCAAAGATAAAGAAGTTTGACTACGCGTCTTTTAAAATGTCAGAT AATTCCTCCATTTTCCTTTACTTGTCACAGTTGACCATAATTTTGTGTCTGAGAATACTTGGCA CTATACATTTGTCACAGTGGCATTCCCTATTTTGTCCTTTGAGGACCAATCATAAATTTAACAA TATGACATTGATACAAGTAATCAGAAATATCTAGAGTGTTCTTTCAAAGTTTCGATTATACATA ACGAAAACATATTCCACTCACCTAGGAGCTTTGGTTATTTTAGGAGATAAAAGTTGATTGCATT GATATGTGTACCATAGTCAACAATGAGACAATTAAACAGAAAAGGAGGGAGCATTTCCGAACAG AGTAGGCATGTTAGTATGTAATGGAAGATGCGACATGCTGCATGATGATATATCCAACAGAATT TAACAATGCAAATAGAATTAATTACTTGGGGATATAATTTCACTAGGTGTTCTTTCAAGAACAT ATACAGTTGCCTCTCTATTTGAAACACACACAAAAATGGTAATAATAAACAATCAGGTATGTGA CAAACCTCAGAGATTTTCTCTTCGAACTCACAGTTAAATATCAAATAACAGTATGTTTCAGAAT CTGGTTTTACTCCGGCAATCTGCATTTGCGCCATGACCATCTGTGCTCCATTGTGGTTTTTCTA TATAGAAACATAGCGAATTTAAAGGGAGAAAGGCACTAAGGCACAAACAATCTGGAATAATAGT CTTTAAATCTTACTACAGTATGTAAATATGGTCTTTTGCTAATAATAAAAAAATCATAACTACT GGGTAAGTCCAGCAGTGTTTCCCCTCAAAAAAAATTTTGAAATTTCATGCCGTTTTCATACTGA ATAGTTACAGTGGTTGCTTATTCGAAACTGTTGCGCATTTGTACTTGAGGGAAGAGGTTTGGAA AATCTCAACAAAAAAAAACAAGCATGTGTCATCTCTTATGTGTTTATGCATTTCTACTGACCAG GCATGATGTAAAATCGAGTCAGCTAAAGTTGAGCAAGTATGCTGACAATAGTTAATAGGAGATC CATCATTTTTTGAATAATTAAAATGGACATATGGATTGTATGGTAACTGAGGAAAACAAATCAA AAGAACAACAGATAACCCGAGAGTTTACCTCTCTGAAATATCCAAGCATGATAGCATTATACAG GCTTACAGTGGATATATCCCCAGACTCTTCTGCATCTGTGAGTATACGGTAAGCACCTTCAAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.221442828

Conservation Information
Conserved circRNAs	NA
PMCS	0.221442828

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1713642-1713660(-)
						
						Potential amino acid sequence
						
							MLGYFREKNHNGAQMVMAQMQIAGVKPDSETYCYLIFNCEFEEKISEYLDQLRQDGIHMSKHIY
MSLVSAYARLGNFDMAKQVLENKEIPPKYLNEIKSALIGALASNGKVLDGLIMYDEIKQSGCHL
EPKSAIALIENTQTKGELDRLYQLLEELGDSNMWFDGCSRVLLYCVQHNHPNLKVLTVYSQMQK
SLGIYPL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	1713642-1713660(-)
Potential amino acid sequence	MLGYFREKNHNGAQMVMAQMQIAGVKPDSETYCYLIFNCEFEEKISEYLDQLRQDGIHMSKHIY MSLVSAYARLGNFDMAKQVLENKEIPPKYLNEIKSALIGALASNGKVLDGLIMYDEIKQSGCHL EPKSAIALIENTQTKGELDRLYQLLEELGDSNMWFDGCSRVLLYCVQHNHPNLKVLTVYSQMQK SLGIYPL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0132600_circ_g.1

Address

Any questions?

Supported by