Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_004788
Alias At_ciR361, Ath_circ_FC5573
Organism Arabidpsis thaliana
Position chr1: 10287736-10289313  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 10/3
Tissues leaf/inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAATCGGAGCAGCATAACAGACCACACTCGATCCTCTCTTTCGCCGCTTCTCCACCCTCGTT
GATACCGTAGCGGTTCGCTGACGATCACCCGATAACcttaacggattgaagcaaacaacactag
tactgtgacctagaccggagatatttgaaggacgaggccggagtttaagagcgagaaagggttt
ctggtggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAACGGATTGAAGCAAACAACACTAGTACTGTGACCTAGACCGGAGATATTTGAAGGACGAG
GCCGGAGTTTAAGAGCGAGAAAGGGTTTCTGGTGGTGAAGAGAAACGATCCGGGACGATGAGAG
ACAGAGACTCGCCATGAATTGTTAAGATTAGTTACGGTGGTGGAAAGATCACTCCGTCATCTTT
CCGTTAAAATTGAATCATTTGCATCAATATCATGATCGCTACGTGGACGGTGTAGATTTAGCGG
GAATGCTTTTAAAGTGGGGCCCATAAATACGTGTTTGGAAAACGACAGTCGTTTAGTTCACAAT
CAATCAAAGAATCTTGAATCTCCACCGTTGTTGGCATCAATACGACTGCAAATCTAACCACGTA
GGATTCCACGTCAGCTTTTAAATATCCCAATCCCATGTCGACCAAAGATTTTAAATGTGTATTG
TTTTTACGTTTGTACATGAAAGATCATTTTTATTGCCAGCGAATAGTTGCCAAAAATGTACCAG
CATTTCTTAAAGAGCGGATAAATGCAAGCACATCTTTCTTTTTTTTCCTTCACACACATTCTTA
CACTGATTAACATTTTTGGTCAGGAGCATATAGTTATAGCAACAAAAGGAGCGATACAACTGTG
ACACCAATAATGGCTACAGTGGCAAGAACTGAACCCTTCTCATATGCTTTCTCCAAGCTCCCTG
CTCGTGAGAAATGTTGGAAAGCCAGAAAACCAGATATTGCTATTGCTATGATTGCCCCTTCTTG
CTTCCCTCTGCAAGTTTATAATGAAGTCAATGAGTCTCGGCGACTAAAGAAAAGAAAACCTTGA
TATATATTAAAACATTACATTCTTTAAGATTCTAACCTTATGTTCATGACTTGATATGGCGCCA
CAATCACCAAGAGTAATGCGATGAATGGAAGCTCAAGTTCACCTATTAATGTATAACTTTAATT
AATTAATAACTTGTAATCAACCTACATATTGAAGATGATTACGAACCTGGAAAAGTGAAGAAAA
GTCGAGCAATAAGCGCCAAGAATGCTGCCCATACACCATACTCTCCCCTACAAAAATAAAGATA
CACAAGTTTAAGTTTAATGACTTCAATAGGCTGCTCAAGCATGCAAAAAGAAGAAGAGAGACCC
ATATATATCACCATGTTAATGAATATATCTCCATGTTAAAAGCTTACTTAATCCAGGCGACGAT
GCTCGATGGTGCGTGGAGAGCGAATAGTGGAACAACAACTGACTTATGTATACCAGTACCCCTT
GCAAGCATCAATGCACTAGAAATGAAACACCATTCAGTATAGCAATTAACTTATGTTATTGACG
TTATGATGAAAACAGAGGAAATTACACAATCATCATTAGCATAATTTCACCAGCATTATGTGTT
AAGAAAATCACAGTAAATGAGAGAGATCATACAGGCAAGAAATGGTGGAGATCCATTGTAGACT
ATTGGCAGAAATCGGAGCAGCATAACAGACCACACTCGATCCTCTCTTTCGCCGCTTCTCCACC
CTCGTTGATACCGTAGCGGTTCGCTGACGATCACCCGATAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.579000018
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA