Detail information of Os10g0492900_circ_igg.1


General Information
CircRNA Name Os10g0492900_circ_igg.1
ID in PlantcircBase osa_circ_007260
Alias NA
Organism Oryza sativa
Position chr10: 18710505-18710823  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATGTTTACAAAAACTGAGATAAAATCTATATCGTGACCAGAAAAGAACGGTGATATACTACT
CTGCTTTGCATTATTCTGCTCTTGCTGGGTTTGACAgtactaccaaatgtgacggatgtcggat
aatgatggtattcgtttctactaaagatgacgatgaaaatagtgtaaagaaaaaaagaaagtta
tcatcggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACTACCAAATGTGACGGATGTCGGATAATGATGGTATTCGTTTCTACTAAAGATGACGATGA
AAATAGTGTAAAGAAAAAAAGAAAGTTATCATCGGTTAGCGTATGATTAATTGAGTTTTAATTA
TTACAAACTCTAAAAATAGATTTATGTAATACTTCAAAACAACTTTTATATAGAAAGGTTTTTA
AGACCAAATAGTTTAACAGTTTTAAAAACATGTTTACAAAAACTGAGATAAAATCTATATCGTG
ACCAGAAAAGAACGGTGATATACTACTCTGCTTTGCATTATTCTGCTCTTGCTGGGTTTGACA
Conservation Information
Conserved circRNAs osi_circ_008559
PMCS 0.250929781
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017