Detail information of BGIOSGA016328_circ_g.1


General Information
CircRNA Name BGIOSGA016328_circ_g.1
ID in PlantcircBase osi_circ_005437
Alias 4:17764416|17766058
Organism Oryza sativa ssp. indica
Position chr4: 17764416-17766058  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016328
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016328_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016328-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGTTTGCGTGACCCTGAAGGAAAGCCGCCTGGTGTCATGGGCTGGTGGCCTTCGAGATCAGTC
ACATTTGTTGAAAATCATGACACAGGATCCACTCAGgcttttaactgggaatcccataagcaca
actggtggagaaatttggaggaaaaagttgttgacctagcacaatcggggtttacatcagcgtg
gctgcctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTTTAACTGGGAATCCCATAAGCACAACTGGTGGAGAAATTTGGAGGAAAAAGTTGTTGACC
TAGCACAATCGGGGTTTACATCAGCGTGGCTGCCTCCACCAACACAGTCATTATCTCCAGAAGG
TAAGCTAGTCAACAATGTATTGTGTCACTCGTAGCTAGTTACAGAAACAAGTGGTCTGAATATC
TGGTCCCTTTATTCTGACAGGCTATCTGCCGCAGAACCTGTACTGCCTTGACTCTTGTTATGGT
TCCCTCCATGACCTACAAGCATTGCTTCGGAAAATGAAAGAACACAATGTAAGAGCTATGGCAG
ATGTTGTTATTAACCATCGAGTTGGGACTACTCAAGGATCGAATGGGATGTATAATCGTTATGA
TGGTATCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGTGGAAAGGTAATCGAC
TTGTTTTTATGCAATGTAATCCTATTGTTCTCAGCCTCATAATTGCATCGTATCTTAATGGCCA
TGTTTTGTTAATAAACTATTATCAATGTCTCTACAACTTTATTACCGGGCACGAAAGTACCGGT
GATAACTTCGATGGGGTTCCCAACATAGACCATACACAGCCATTTGTACGGAAGGATATTATTG
ACTGGTTGATCTGGCTTCGAGAAAGCATTGGTTTTCAAGATTTCCGCTTTGATTTCACGAAAGG
GTAAATAGTCAACTCGATAGGTTAACATCATCTGTGATAGGGGACCTCCAAATTGCTTTGTTAA
AACATGCTGATCAGCCACAATTTTCTGTTTAGTGCAGTTATGCAGCGAAGTTTGTGAAAGAATA
CATTGAGCAATCAAAGCCTCTTTTTGCGGTGGGGGAATACTGGGATAGCTGTGAATATAGCCCC
CCTGATTACCGTTTGAACTACAATCAGGGTAAGAGATTTGTAATGACATTGCTACTGATTGCTT
ATGCCATAGTGATGCTGTATCTAGCCTAAGCGTATGTTCCTTGATTGACAACTGTGAACACTAG
CATGCTGATTTTTTTTACTTCTGTAATTTACAGTACTGCCCGTGTGAAGTTTTGTGATTTTTGA
ATTATTAACCACTGTCATGGTTTCCTCTTTTGTTGCTTTCTACTCCTTGTGCTATTGTCGAGAT
GAAGCAAGGGACTTAGATATCTTTTGTGAATGCATGACAGTTACATTAGATTGAGTCTGTGTAG
TTAGCATATGGTTTAGACCATATACAAATTTCGAAACAGTTTTCTCAACCATGAAAAATGCTCC
TTGCTTTACTTTGATATGGACATTTGGCGTATATTTTTTTTCCATAAACTGAACAATTATTTTT
TAGCAGATAAACACAGGCAGAGAATTATCAATTGGATGGATAGCACTGGAGGACTTTGTGCTGC
ATTTGATTTCACAACAAAGGGTATTCTTCAGGTTAGAAATAGAAAATTGTTCTATTCCTTTTTT
GGGGTAAATGTCTACAGGTTAGTTTGATCAGTTTACTGTTGTTTTCAGGAAGCTGTCAAAGGTG
AGTTGTGGCGTTTGCGTGACCCTGAAGGAAAGCCGCCTGGTGTCATGGGCTGGTGGCCTTCGAG
ATCAGTCACATTTGTTGAAAATCATGACACAGGATCCACTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 17764438-17766019(-)
17764706-17766055(+)
17766040-17764479(+)
Potential amino acid sequence MGFPVKSLSGSCVMIFNKCD*(-)
MKEHNVRAMADVVINHRVGTTQGSNGMYNRYDGIPVSWDEHAVTSCSGGKCSYAAKFVKEYIEQ
SKPLFAVGEYWDSCEYSPPDYRLNYNQDKHRQRIINWMDSTGGLCAAFDFTTKGILQEAVKGEL
WRLRDPEGKPPGVMGWWPSRSVTFVENHDTGSTQAFNWESHKHNWWRNLEEKVVDLAQSGFTSA
WLPPPTQSLSPEGYLPQNLYCLDSCYGSLHDLQALLRKMKEHNVRAMADVVINHRVGTTQGSNG
MYNRYDGIPVSWDEHAVTSCSGGKCSYAAKFVKEYIEQSKPLFAVGEYWDSCEYSPPDYRLNYN
QDKHRQRIINWMDSTGGLCAAFDFTTKGILQEAVKGELWRLRDPEGKPPGVMGWWPSRSVTFVE
NHDTGSTQAFNWESHKHNWWRNLEEKVVDLAQSGFTSAWLPPPTQSLSPEGYLPQNLYCLDSCY
GSLHDLQALLRKMKEHNVRAMADVVINHRVGTTQGSNGMYNRYDGIPVSWDEHAVTSCSGGKCS
YAAKFVKEYIEQSKPLFAVGEYWDSCEYSPPDYRLNYNQDKHRQRIINWMDSTGGLCAAFDFTT
KGILQEAVKGELWRLRDPEGKPPGVMGWWPSRSVTFVENHDTGSTQAFNWESHKHNWWRNLEEK
VVDLAQSGFTSAWLPPPTQSLSPEGYLPQNLYCLDSCYGSLHDLQALLRKMKEHNVRAMADVVI
NHRVGTTQGSNGMYNRYDGIPVSWDEHAVTSCSGGKCSYAAKFVKEYIEQSKPLFAVGEYWDSC
EYSPPDYRLNYNQDKHRQRIINWMDSTGGLCAAFDFTTKGILQEAVKGELWRLRDPEGKPPGVM
GWWPSRSVTFVENHDTGSTQ(+)
MTQDPLRLLTGNPISTTGGEIWRKKLLT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021