Detail information of BGIOSGA015176_circ_g.3


General Information
CircRNA Name BGIOSGA015176_circ_g.3
ID in PlantcircBase osi_circ_014317
Alias Chr04:20147935_20148478(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17444995-17445538  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015176
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015176_circ_g.1 BGIOSGA015176_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCATAAAAACATAACTAATAATAACATAGAGAAGAATCTGGAACACCATGCTAGCATTAACA
GCACTTCCTATTAAATGACTAGATCAGGAGAGAAACtaagatctacatattccataagtatgag
ttcaacacatcaacatatatgataaattgatacggagagtatttatacaacgaaggaaaaggaa
tttctcta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAAGATCTACATATTCCATAAGTATGAGTTCAACACATCAACATATATGATAAATTGATACGGA
GAGTATTTATACAACGAAGGAAAAGGAATTTCTCTAATTATAGCAACTCGTGCCGAAACAAACT
CACCAAAAAAGGGGGTTATCAATTCATGTAACTCACAAGTCACAACTTTGTTACTAAATAATAA
TGTAGTGAAATATCTAAACCATGCAATAAACTCATGCAACAATTGAAATGAGGATACTTTAATA
CATCCAGAACACTATCTTTCCCTTAAATGGAACAACAAAGAAATGACTTCCAGTATGTTTACTG
AATGCATTCAACATGGCACAATATACAACAATATGTCATACATTGTGATCTTAGAAGCAATAGT
TTGTTTACCAATTCTTTCAAAACATAGTTTGTTTACCAAAGTTGAGAGCTTGTTATTACCAGTC
ATAAAAACATAACTAATAATAACATAGAGAAGAATCTGGAACACCATGCTAGCATTAACAGCAC
TTCCTATTAAATGACTAGATCAGGAGAGAAAC
Conservation Information
Conserved circRNAs osa_circ_023686*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021