Detail information of Os08g0318500_circ_g.24


General Information
CircRNA Name Os08g0318500_circ_g.24
ID in PlantcircBase osa_circ_036694
Alias NA
Organism Oryza sativa
Position chr8: 13762734-13763071  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os08g0318500
Parent gene annotation Sec8 exocyst complex component specific domain containing protei
n. (Os08t0318500-01)
Parent gene strand -
Alternative splicing Os08g0318500_circ_g.23 Os08g0318500_circ_g.25
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CG-TT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTAAACTCTGGCACATGGTGCACACACTGCATTATCACAGGCATGGTGCAAATGGTAATAGTA
GCCTGTTTATCACAAGAAATGTATATTAATACTAACagtatgtgatattgctatcatcaaagaa
ataatacgcactcagctcatgatagctttaatagccatctcaaggtacagcatataggaaaaca
aagccaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTATGTGATATTGCTATCATCAAAGAAATAATACGCACTCAGCTCATGATAGCTTTAATAGCC
ATCTCAAGGTACAGCATATAGGAAAACAAAGCCAAGATGGTACGTACAAATAATTAAGTTAATC
AACCTCTGAAATACACTCCATCCTCACTTTGAGAGAAAAAAACGAAGAAATATCCACCGTCACA
AGGAATCTCTACTTAACCCGGTTAGAGAAAAAGAACATTATCGCCTTCTAAACTCTGGCACATG
GTGCACACACTGCATTATCACAGGCATGGTGCAAATGGTAATAGTAGCCTGTTTATCACAAGAA
ATGTATATTAATACTAAC
Conservation Information
Conserved circRNAs osi_circ_017777 osi_circ_017776
PMCS 0.398546069
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017