Detail information of Os12g0429200_circ_g.6


General Information
CircRNA Name Os12g0429200_circ_g.6
ID in PlantcircBase osa_circ_011343
Alias NA
Organism Oryza sativa
Position chr12: 13766689-13770118  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0429200
Parent gene annotation Similar to Relative to SR12 protein (Fragment). (Os12t0429200-01
)
Parent gene strand -
Alternative splicing Os12g0429200_circ_g.2 Os12g0429200_circ_g.3 Os12g0429200_circ_g.4 Os12g0429200_circ_g.5 Os12g0429200_circ_g.7 Os12g0429200_circ_g.8 Os12g0429200_circ_g.9 Os12g0429200_circ_g.10 Os12g0429200_circ_g.11 Os12g0429200_circ_g.12 Os12g0429200_circ_g.13 Os12g0429200_circ_g.14 Os12g0429200_circ_g.15 Os12g0429200_circ_g.16 Os12g0429200_circ_g.17 Os12g0429200_circ_g.18 Os12g0429200_circ_g.19 Os12g0429200_circ_g.20 Os12g0429200_circ_g.21 Os12g0429200_circ_g.22 Os12g0429200_circ_g.23 Os12g0429200_circ_g.24 Os12g0429200_circ_g.25 Os12g0429200_circ_g.26 Os12g0429200_circ_g.27 Os12g0429200_circ_g.28 Os12g0429200_circ_g.29 Os12g0429200_circ_g.30
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0429200-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGGACCTCCAGATGTAAGTGAGAGGATACTAGGCTTATGTCTACTTGAACGACTGGGAGACCC
AGATTCTACAGTAAAAACTGAAGTCTGTGCACCAATctgatatgtccaaagggaattagttagg
tcaacgtccccatctgacaagccagtgagtgttacttgacctctaaatccagctccatctttct
ccaagaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATATGTCCAAAGGGAATTAGTTAGGTCAACGTCCCCATCTGACAAGCCAGTGAGTGTTACT
TGACCTCTAAATCCAGCTCCATCTTTCTCCAAGAAAGCACCATAGTTCTTTGCATTTGTCCAAG
AGGTCATGATACAACAAACAATATATTATGTTTTGTACATGGTGACTATGTATGCAGATAAAAC
AGAAGCAGACATATAACCAAATAAAATGATACCATCACATGCACAGGCATTGTATAGATTGTTC
TAGCTTCAACATAAATGAAAGTTCTTCGCTCACTATTACTTTGTCAAGTTTACAGGAATAGGAA
TAAGAAATTTTCACATACCAAACGTGTCCCAACCTGGGTAAAAACTTACAACTAAAACCACATC
AATAAAAGGAAACCTACAAAGGATATGCCCCTTTTGCTATGTGTGGTTGCACCTTGAAATCTCA
TATTAATTAAAAATTTATTACAACAGATATGAATGCTCCTGGCCTCATGATACAAATGCTAAGC
TTAAATGGAACATGAAAAAAATGGAATTAACGCATTCTTGAGCTTTGTAAAAATTCCACTTAAT
CCATTAAACTACAAATAAACTGGACTAGTCCCTTAGACTGAATGCTAACAGGGCTCAGTGACAG
CTAGATAGTACGTTTTTGCTGATGGGTCTTAAAAGAAAATAGAGTTAACAATGTGCTTGCAAAA
TCCCCATCAGATGGATCTCTACAACAAAAGTCACTGCGATTACATTATGTCATCAAAATAACCT
TGGAAATGTCAATTGACCCGGGTTTTGCATGTTTATGGGGTTGTGTGAGTTTGTTAAATGGACT
TTTTGCAAAGCCCAGAGAGATAAAAATCAACTTCCAAAAAGGAAAATTCAAATACCTGCAAGCC
AACAATCTCTGAAAGTAATGTCAACTCATTAAGCCCTTCAACCAATTGAATCGGTTGTTTCAGT
GAGACCCAGTGACCAACTTGACTGCCTTCATATTGAAAGGAAACCTTATTAAACGACTGAAATA
TTGCTATCAATGCGTTAATGAAGAAATGTAACACCACAGCATGCAAGACTGCATTTTCAAATGT
TATACCAAGACCAGACCATTTAATTTCTGAGCGCTTAACAAGATCCCAACTATGTAGCATGGGT
ACCTCCTGAAATGTACTGCATATGTACTAGACATGATTTGGTAACTTTTCTTTTTTGTTCATTT
AAAAAAATAAAATAATTGGCAATAACTCATTACTTCCTCCCTGGTACCTCTAGGCCAAACCTCT
TCCTTGGATGCCCATGGAAAGCCAGTTTAACTATCCACTTCCTTCGTACCTGGGCTATTTTTTT
AACTATCCACTTCCTTCGTACCTAGGCTATCCTTCAGAAGCCTGGTTCACGGGATTTGGTTGCA
GCAGCGTGTCAGCGCTTGGAGCAGGTGGTCAGGGAATGTTTTACCTAGGGACATGGGTGGCGGC
CTAGCCTGAAGATTGGTGCTCACTAAATTTTACTGCTTTCCTTCTCTTGTTACAAACTCTTTTG
TGGTTGTGTCTGTGTTTTGGCTGTGTGCATCCTAGTTATGCAGAGGCTGAGAGTTTTCTTAGTA
TGGTCCTATCAACTTGATGTAATTGTCTAAGATTAATAAAAGCTTCCTTTATCAAAAAAAAAAA
AAGAAGCCAGTTTAAGGCTGCCAACTCGACAACTACCATACAAACTATACAACCTAATCCCCTC
CATTGCATATCTAACTTCTATATTTTTAAATTATCACACACACGCGCGCACGCGAACATGTATC
AGTGTTTTAGGGGAAACGGCTTACCACGGTATCACCTTATCACGTACTCTAATCAAATGCTCTA
CACAAAAAGCTTACAGACAGGAAGCTTAAAACAGGTGGGCTAAAGTACTTCATTACCCAATACT
TAATGTATCTCCACTCCAACTGATTGTACAATTATATCATGGGGTGAATAACAGTTATATCCAA
GTAGGGAGGTTGTCAGCCCATGGGGTGAATAACAATTAAAAGAATGTAATAAGGATGCGGAAAA
AGGTCTCAGTTCTCTCATTATCCTAGTGGCTTGGGAGATTTGGAAGCATAGGAATGATTATATG
TTTTAATGGGGCTAGTCCTAGTGTTATGGCTGTCATTCAAACTGTAGCAAATGAGTGTAGCTTT
TGGTGTTTGGCCGTAGCCACTAAGCTCGGAGAGTTCCTTAGAAGGTCGCTTACCCCGGTTGGGT
AAAGTTGGGTAATGTGAGCCTTTTGTTTTGTAACTTCTTTTAAGTGCTTTGGGGGAGAATGACG
CTTTAGTCACTTCCCCGTCTTTTATTCCTTCTTAATGAAATGAGCATACTCATGCGTATTCCCA
AAAAAAAACATATAAACACTGACAAATTAAATGCAAAGCATTTTTTTCATAAAGATTAAGAAAT
TGAAATTAATACCTGCAAGCTTGCCATTTACAAATACACGAGCTACATCACGAATTTTATCTAT
TGTTAATGAAGGAAGAACCCCTTTCGAACTCCAGAATGCAACGTCTGCATCAGAAATATTTACC
CTGTTGAATTGAGAAAATGTTAATAGTAATTATACTGTTGAAAATAATGAGGATTGTCAGCAGA
CTATATGTGCCATTCAAACTGCATACTGGTACAGGACAGTGAACATGACATCATTTGAAGGTAC
TCTGGGTTGGAATTTGAAATTCTAAATAGTGGAAAATAGTCAATATATAGTAATATACACAGTT
GAAATTTCATTGAAAAATGAAATTGAATGGAGAGCTCAGTCTGCTTTCGTGTTTGCATGCAAGT
AGAGTGCTAAAAAATATTCTACATAAGATAACTGGGAAATTAACACCCAATGTGAGGTCGACAA
GTGGGCTTGGGACACTGGCAGTAATACTACTAAAATATTGCATTCTCTTTTTGTTATTTGAGGA
ATCAAATTTTCCCCATGCATAAATCATATCACTAGAAATAATACTCCTTTTGGTGCTGATGATC
ATCACCAATAACATTTTGGGCACGAGTGTACACACTTGCACACAAAGAAACATTATCAGAATGT
GTACTTCAAAATGTCGAGTCAACTAATCATGGACTGAATACAAGAAAAATAATAGCAGATGGTT
CACTACAGAATCTGATCTCACAAAATCATATATTCTCCAACAGCATGTACTCAACACTCACCTG
GTAGTATACCACAAGTAGTCAGATATGTCCTTCGTTACGTTCAAGTGCTCTAATATTCCCTGAA
CAGCAAAATTGTTTCCACCCCAAGTACCAATAGTCTCTTTAGAAGTCCACCAAGTACTTGAGAG
ATACGGACCTCCAGATGTAAGTGAGAGGATACTAGGCTTATGTCTACTTGAACGACTGGGAGAC
CCAGATTCTACAGTAAAAACTGAAGTCTGTGCACCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.212619517
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017