Detail information of Os03g0241300_circ_g.4


General Information
CircRNA Name Os03g0241300_circ_g.4
ID in PlantcircBase osa_circ_018804
Alias Os_ciR3888
Organism Oryza sativa
Position chr3: 7482983-7483164  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os03g0241400
Parent gene annotation Hypothetical protein. (Os03t0241400-00)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0241300-01:1
Os03t0241300-04:1
Os03t0241300-01:1
Os03t0241400-00:1
Os03t0241300-04:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTGTGGGTCTGGGAGATTATGGTTCCCTGCCACAGTTTTCCAGCTTTGTTCCAGAGCGTTTC
TTGTTTCAGGTTGCTGAGCCTGTCAAActtcatgtctatcagttgccatatgtggttccattct
aggtttgtgtagtgagatggagtaggtgagaagtagagagatgttgggagagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCATGTCTATCAGTTGCCATATGTGGTTCCATTCTAGGTTTGTGTAGTGAGATGGAGTAGGT
GAGAAGTAGAGAGATGTTGGGAGAGAGCTGTGTGGGTCTGGGAGATTATGGTTCCCTGCCACAG
TTTTCCAGCTTTGTTCCAGAGCGTTTCTTGTTTCAGGTTGCTGAGCCTGTCAAA
Conservation Information
Conserved circRNAs osi_circ_014120
PMCS 0.200090934
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015