Plant Circular RNA Database

Detail information of AT5G27970_circ_g.9

			
						 General Information
					
						CircRNA Name
						AT5G27970_circ_g.9
					
						ID in PlantcircBase
						ath_circ_040854
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 10008822-10013679  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							AT5G27970						
					
						Parent gene annotation
						
							ARM repeat superfamily protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G27970_circ_g.3 AT5G27970_circ_g.4 AT5G27970_circ_g.5 AT5G27970_circ_g.6 AT5G27970_circ_g.7 AT5G27970_circ_g.8 AT5G27970_circ_g.10 AT5G27970_circ_g.11 AT5G27970_circ_g.12 AT5G27970_circ_g.13 AT5G27970_circ_g.14 AT5G27970_circ_g.15 AT5G27970_circ_g.16 AT5G27970_circ_g.17 AT5G27970_circ_g.18 AT5G27970_circ_g.19 AT5G27970_circ_g.20 						
					
						Support reads
						1
					
						Tissues
						inflorescences
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G27970.1:23
AT5G27970.5:23
AT5G27970.3:23
AT5G27970.2:23
AT5G27970.4:23

General Information
CircRNA Name	AT5G27970_circ_g.9
ID in PlantcircBase	ath_circ_040854
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 10008822-10013679 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	PcircRNA_finder
Parent gene	AT5G27970
Parent gene annotation	ARM repeat superfamily protein
Parent gene strand	+
Alternative splicing	AT5G27970_circ_g.3 AT5G27970_circ_g.4 AT5G27970_circ_g.5 AT5G27970_circ_g.6 AT5G27970_circ_g.7 AT5G27970_circ_g.8 AT5G27970_circ_g.10 AT5G27970_circ_g.11 AT5G27970_circ_g.12 AT5G27970_circ_g.13 AT5G27970_circ_g.14 AT5G27970_circ_g.15 AT5G27970_circ_g.16 AT5G27970_circ_g.17 AT5G27970_circ_g.18 AT5G27970_circ_g.19 AT5G27970_circ_g.20
Support reads	1
Tissues	inflorescences
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G27970.1:23 AT5G27970.5:23 AT5G27970.3:23 AT5G27970.2:23 AT5G27970.4:23

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGCAGAAAAGCTGATCCCTGCCTTGATAGAGCTTCTCCTTCAGGCTCCTGCAGTTGAAAAGTA
TATCCTGTTTCCGGAAGTCATCCAGAACCTGAGAAGgtcacaaggagaggcaatcgtattagag
atactgaaaggatatcaagcatttactcaggtaaatgcaaaccagattcgaagtgtccatatgt
tatgtggc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTCACAAGGAGAGGCAATCGTATTAGAGATACTGAAAGGATATCAAGCATTTACTCAGGTAAAT
GCAAACCAGATTCGAAGTGTCCATATGTTATGTGGCTGCTAATTGTCGATGTGTGGAACAAATG
TGTCCCTGCTATACAGTTTTTACATTGCCACTTAAGCGTATGTTGTCTACCTATCCAGAAGAAT
TGACGGGTATCCTTCAAATAATTTTTTCAGGCATGTGGCGTTCTCCATGCTGTAGAACCCTTGA
ACTCTTTTCTTGCATCGCTTTGTAAATTTACTATCGTTTTGCCAACTGATGTGGAAAGGAAAAG
GTACCTTGAATATTTTGCTATATATCATATGAAAGTTACTTAATCAATGCAAGCCAGATAACTT
TTTGTTATTAAATTTGTAATTTCAGCAGCGTCGTACAGTCGCCTGTGTCCAAACGTTCTGAAGT
ACAGGTTGATCTGAAAGATGTCATTGTCCTGACACCCAAGAATGTTCAGGTATTTAATTTGATA
TTCTTTATTTAGGGTTTCATTCTTTCGTACATGCACATCTTGAAACAAAAAAAGTATTCTTACC
CATTTATAATTATTTGGTTAAACGTACTTGGCTGACCTAAGACCGTCTGATCTTTGTTCAGGCA
TTGAGAACACTCTTCAACATCGCTCACAGGTTGCATAACGTGTTGGGCCCATCATGGGTGTTGG
TGAGTGTTTTGCTTCAACTATGTTCAAGTAATCTATCTCTTGATAACGAAAATCCTAAATGAAT
ACAGGTTCTTGAAACTCTGGCAGCCCTAGATCGAGCTATTCATTCTCCTCATGCAACTACCCAG
GTAAATTTGGCAAAACCCCATGCAGGATTCTGTCTTTTTACTTGTATAATACAACTTGATATTT
ATTATAGTTAGGTTATCACTTTATCTTTTTCTCTGATATCTGAATGCTCTTACAAAGCTTATAG
GGCAATATAATATTATCTTTTATAGGAGGTTGCAACTGCAGTCCCAAAGCTTACCAGAGAGCCT
TCTAGGCAGTACGCTGATTTTAGCATTCTATCCTCCTTAAATTCTCAGGTAAGCCATATCAATT
TTCTTCTATAGTCTATGCCCTTGGATTGCTCTTGTTAAATCACTTCTTGCAAACTGGATCCTGA
ACATCTGATTCTTGACTCATTGCTTTCATCTTGCCAGCTGTTTGAGAGCTCAGCGCTGATGCAA
GTGTCTTCTGTTAAATCACTTCTTTCTGCACTCCATATGTTGTCCCATCAATCCATGACAGAAA
CTTCAGGCAGTGTTTCATCAGCTTCAAGTAAACAAATTGGGAGCATCAGTTTTTCGGTGGACAG
AATGATATCTATACTCGTAAATAATCTTCACAGTATGTTCTCTATTGATTAATGAAGTACATCT
TCAGATTGTAGTCTTTCTTTTCTGTGCTATCGCCTTGTATATTGGTCTAGTCTCTGGATTATTT
TGTATACTGGTCATTCTGATTAATCTTTGTATGCCAGGGGTGGAACCACTATGGGACCAAGTGG
TTGGCCACTTTCTTGAGGTGACACGGCGTTCATAATTCTGTTTATTTGTAGGATATCCTGACAT
TGTTGTGGGCTTTACTGACACTTCAACTGCATATTGCAGCTCGCTGAACATTCAAATCAGAACT
TGAGAAATATGGCGCTTGATGCCCTGGATCAATCCATATGTGCTGTCTTAGGTTCAGAGCAGTT
TGGAGAAGATCCAGCCAGATCAAGAGATGCAACTTTGGATGTGAGATCTCTCTTCGCTGTCCTT
GCTTAAATTCGAGAGTTTTCCATCTCATGCAGAAGGGACCTTACTTTGATTATTCTTCTCTTCT
ATTTTTTGTTATTCTTCCTAGGTAGACTCAAAGTCAACTGAGGTGAAGTCAGTTGAGTGTGCTG
TACTATCTTCTCTCAGGGTTCTTTACTTTTCTGCTCAAAAGGCTGATGTTCGAGTTGGGTCATT
AAAAATTCTTCTTCACGTACTGGAGGTATGTATAATACAATATGAACATTCAAAATCTTTGTTT
ACCTTTAATATCTGACATTTTGCTTCTGCATAAATCTTATATCATCAGAGATGTGGAGAAAAGT
TATACTATAGCTGGTCGAGCATTCTTGAAATGTTGAGGTATGTTTCCTGCTTACTTTCCATTTT
TTCCCACATATGTATAATTGAATTTTCCATTCTATTTGCTGATCCTATTCCTCACATATTCTCT
TTAGGTCTGTTGCAGACGCATCAGAGAAGGATGTGGCGACCCTTGGGTTCCAGGTTAGTGAAGG
ATGACTTCCTGTAGATTCGATAAATTAGCAGTAGTGTACAGCCTTAGTCCATCTCTTACTTTAT
ACCTTGTCACTGATACCTTGTTTGTTCTTCCCAGAGTCTCCGGGTTATTATGAGTGATGGACTT
CCTACACTCCCGGAAGACTGTCTTCATGTGTATGTTCCTATCTCTGTTTAAATTACTATGTTTT
CTTATTTTACATGCTGATACTTAGCTGCCAGAGATGTCAACACAATTCCTTGTCTTATATGGGA
TGGTAGTTAATGATATTAATATCTCAGGTGCATAGACGTTACTGGAGCTTATAGTGCACAAAAG
ACTGATTTGAATATAAGTTTGACTGCCATTGGCCTGTTGTGGACTTTGACTGATTTCGTAGCAA
AAGGACTCCACCATGGGTCTCTAGTGGAGAAAGGATCGGGTAAATAACTGTCAAATCCTAGTCT
GCACTCCTCACCTCAAGAGAAGCTCTATTTTTAAAAAATAGTAAGCTGAGCTGTTCCTGCAGGA
TTCAATAATGCAGATTCCACTCCACAGCAAACAAATGGCGAGGACGGGGAAAAGCATATGGGTA
GCAATTCGGGCAAGTCAGATTATGAAGCTCCAATACAAGTGGTCAATCATGAGAAATTACTGTT
CTTAGTCTTTTCGTTAATTCAGAAACTTGTTGATGACGAACGACCAGAGGTATTTTTCATAGAC
CACCATTTTTTTTGTAATGTGAATTTTTTTATTTCCTTTGAAAGTTGGTGACCCCATCACTTAT
ATTTTTTAATCGCTATTAAATTTCCAGGTCAGGAATTCAGCTGTCAGGACATTTTTTCAGATTT
TGGGAAGTCATGGAAACAAACTTTCAAAAAGCATGTGGGAGGATTGTCTATGGAACTATATCTT
CCCAATGTTGGATGGCGCCTCTCACAAGGTGAGGAAATAGGTTCAATAGATTCATCTTAGAAGA
CCCTTGTGACAAGTGAATCTTTTTTGTAGGCTGCAACATCATCGAAGGACGAATGGCAAGGGAA
AGAAATCGGTACTCGAGGAGGGAAAGCTGTGCACATGCTTATACATCATAGGTGACAAAAAAAA
TTTCGTCGTGTGGATATCTTCTGCATTGTCAATCTCTTTGTGATAGTCTTTGATGCCTGAATAA
CTCGTTTACATCAAAAGATTTTTACTAATTTTCCTACCATTGAACTTGCCATCCATTTTCTGAT
ATGCAGTCGCAATTCAGCCCAGAAGCAGTGGGATGAAACATTTGTACTTGTCCTTGGAGGAATA
GCCCGCCTCTTCCGGTCCTACTTTCCTCTTCTTGAAAGCTTACCTAACTTCTGGTCAGGTGAGT
GAATTGTAATAATCCTTGACTGCCCTGCAGTGCTTATTGTTTAGGAGAAACTGAAATATCGTGA
AACTTTCTGCTTCTGTAGGATGGGAGTCTTTGCTTGCTTTTGTTAAGAAAAGCATTTTCAATGG
GAGTAAAGAGGTATCACTTGCAGCGATAAATTGTCTGCAGACAGCTGTTGTGTCCCACTGTGTC
AAGGTAACAACGCAGCTATTTGAACAATCTATGAGCTACAATGTACACTGTCATATCCATATTT
CACTCTCTTAACTTTTTTTTTTTTTATGAACTAGGGAAACTTGCAACTTCGATATCTTAATTCG
GTACTGGACGTGTATGAGCTTGTTTTCCAGAAGTCATCGAGTTACACAGGTGACACAGCAGCCA
AGGTGAAACAAGAGATTCTGCATGGTTTAGGTATTTCAATTTTCAGTAAAGTCTCTACATTTTC
GTAGTCTTTTTTGCTGACTCAGATAAAAAAATTCAGTGAATAGAAAAGGCTTTTAAAGTGTTCT
CTTTAGCGTGACATAATTTTTGCAACATTTGGTTCTTACTCTTTCCTTTTTTTTTCTCGTTTAA
TGTTTTTACAGGTGAATTATATGTGCAATCATCGAAGATGTTTGATGATAAAATGTACATGCAA
TTGTTGGGAATTGTTGATTTGGCTATAAAACAGGCCATCATAAATAGCGAAAATTTCGAAACTG
AATATGTAAGTTTGTTCTCTAATCATTTACTTTCTTCTTGCTCTCAAGCACTCATTTTAAGCTT
ATTCCATTTATTATTTCAAGGGACATGTACCCCCTGTACTACGTCATGTTTTGGAAATCTTGCC
CTCTTTGGGGCCTCCTGAACACCTTTCGTCAATGTGGCTAATCTTGCTTAGAGAGTTCTTGCAT
TATCTTCCACGGGTTGATTCTGTTCTGCCAAATGACGAAGGTGAGATTCAGCAGAACAACACAG
GTCACTGTGCAAGTAAGTACTTTATGTTAATCTACTCTCAACAAGTCTGAATCTAATATTCTTT
TATCACCCCAGGCAGTGAAGTATTGGAACAGAAAGCTGATGCTTCGTCTGAAACAATTCCAACC
ACAAGAATTACGACTAATATGTTTGCAGAAAAGCTGATCCCTGCCTTGATAGAGCTTCTCCTTC
AGGCTCCTGCAGTTGAAAAGTATATCCTGTTTCCGGAAGTCATCCAGAACCTGAGAAG
						
					

			
		

Sequences
Splice junction sequence	TTGCAGAAAAGCTGATCCCTGCCTTGATAGAGCTTCTCCTTCAGGCTCCTGCAGTTGAAAAGTA TATCCTGTTTCCGGAAGTCATCCAGAACCTGAGAAGgtcacaaggagaggcaatcgtattagag atactgaaaggatatcaagcatttactcaggtaaatgcaaaccagattcgaagtgtccatatgt tatgtggc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTCACAAGGAGAGGCAATCGTATTAGAGATACTGAAAGGATATCAAGCATTTACTCAGGTAAAT GCAAACCAGATTCGAAGTGTCCATATGTTATGTGGCTGCTAATTGTCGATGTGTGGAACAAATG TGTCCCTGCTATACAGTTTTTACATTGCCACTTAAGCGTATGTTGTCTACCTATCCAGAAGAAT TGACGGGTATCCTTCAAATAATTTTTTCAGGCATGTGGCGTTCTCCATGCTGTAGAACCCTTGA ACTCTTTTCTTGCATCGCTTTGTAAATTTACTATCGTTTTGCCAACTGATGTGGAAAGGAAAAG GTACCTTGAATATTTTGCTATATATCATATGAAAGTTACTTAATCAATGCAAGCCAGATAACTT TTTGTTATTAAATTTGTAATTTCAGCAGCGTCGTACAGTCGCCTGTGTCCAAACGTTCTGAAGT ACAGGTTGATCTGAAAGATGTCATTGTCCTGACACCCAAGAATGTTCAGGTATTTAATTTGATA TTCTTTATTTAGGGTTTCATTCTTTCGTACATGCACATCTTGAAACAAAAAAAGTATTCTTACC CATTTATAATTATTTGGTTAAACGTACTTGGCTGACCTAAGACCGTCTGATCTTTGTTCAGGCA TTGAGAACACTCTTCAACATCGCTCACAGGTTGCATAACGTGTTGGGCCCATCATGGGTGTTGG TGAGTGTTTTGCTTCAACTATGTTCAAGTAATCTATCTCTTGATAACGAAAATCCTAAATGAAT ACAGGTTCTTGAAACTCTGGCAGCCCTAGATCGAGCTATTCATTCTCCTCATGCAACTACCCAG GTAAATTTGGCAAAACCCCATGCAGGATTCTGTCTTTTTACTTGTATAATACAACTTGATATTT ATTATAGTTAGGTTATCACTTTATCTTTTTCTCTGATATCTGAATGCTCTTACAAAGCTTATAG GGCAATATAATATTATCTTTTATAGGAGGTTGCAACTGCAGTCCCAAAGCTTACCAGAGAGCCT TCTAGGCAGTACGCTGATTTTAGCATTCTATCCTCCTTAAATTCTCAGGTAAGCCATATCAATT TTCTTCTATAGTCTATGCCCTTGGATTGCTCTTGTTAAATCACTTCTTGCAAACTGGATCCTGA ACATCTGATTCTTGACTCATTGCTTTCATCTTGCCAGCTGTTTGAGAGCTCAGCGCTGATGCAA GTGTCTTCTGTTAAATCACTTCTTTCTGCACTCCATATGTTGTCCCATCAATCCATGACAGAAA CTTCAGGCAGTGTTTCATCAGCTTCAAGTAAACAAATTGGGAGCATCAGTTTTTCGGTGGACAG AATGATATCTATACTCGTAAATAATCTTCACAGTATGTTCTCTATTGATTAATGAAGTACATCT TCAGATTGTAGTCTTTCTTTTCTGTGCTATCGCCTTGTATATTGGTCTAGTCTCTGGATTATTT TGTATACTGGTCATTCTGATTAATCTTTGTATGCCAGGGGTGGAACCACTATGGGACCAAGTGG TTGGCCACTTTCTTGAGGTGACACGGCGTTCATAATTCTGTTTATTTGTAGGATATCCTGACAT TGTTGTGGGCTTTACTGACACTTCAACTGCATATTGCAGCTCGCTGAACATTCAAATCAGAACT TGAGAAATATGGCGCTTGATGCCCTGGATCAATCCATATGTGCTGTCTTAGGTTCAGAGCAGTT TGGAGAAGATCCAGCCAGATCAAGAGATGCAACTTTGGATGTGAGATCTCTCTTCGCTGTCCTT GCTTAAATTCGAGAGTTTTCCATCTCATGCAGAAGGGACCTTACTTTGATTATTCTTCTCTTCT ATTTTTTGTTATTCTTCCTAGGTAGACTCAAAGTCAACTGAGGTGAAGTCAGTTGAGTGTGCTG TACTATCTTCTCTCAGGGTTCTTTACTTTTCTGCTCAAAAGGCTGATGTTCGAGTTGGGTCATT AAAAATTCTTCTTCACGTACTGGAGGTATGTATAATACAATATGAACATTCAAAATCTTTGTTT ACCTTTAATATCTGACATTTTGCTTCTGCATAAATCTTATATCATCAGAGATGTGGAGAAAAGT TATACTATAGCTGGTCGAGCATTCTTGAAATGTTGAGGTATGTTTCCTGCTTACTTTCCATTTT TTCCCACATATGTATAATTGAATTTTCCATTCTATTTGCTGATCCTATTCCTCACATATTCTCT TTAGGTCTGTTGCAGACGCATCAGAGAAGGATGTGGCGACCCTTGGGTTCCAGGTTAGTGAAGG ATGACTTCCTGTAGATTCGATAAATTAGCAGTAGTGTACAGCCTTAGTCCATCTCTTACTTTAT ACCTTGTCACTGATACCTTGTTTGTTCTTCCCAGAGTCTCCGGGTTATTATGAGTGATGGACTT CCTACACTCCCGGAAGACTGTCTTCATGTGTATGTTCCTATCTCTGTTTAAATTACTATGTTTT CTTATTTTACATGCTGATACTTAGCTGCCAGAGATGTCAACACAATTCCTTGTCTTATATGGGA TGGTAGTTAATGATATTAATATCTCAGGTGCATAGACGTTACTGGAGCTTATAGTGCACAAAAG ACTGATTTGAATATAAGTTTGACTGCCATTGGCCTGTTGTGGACTTTGACTGATTTCGTAGCAA AAGGACTCCACCATGGGTCTCTAGTGGAGAAAGGATCGGGTAAATAACTGTCAAATCCTAGTCT GCACTCCTCACCTCAAGAGAAGCTCTATTTTTAAAAAATAGTAAGCTGAGCTGTTCCTGCAGGA TTCAATAATGCAGATTCCACTCCACAGCAAACAAATGGCGAGGACGGGGAAAAGCATATGGGTA GCAATTCGGGCAAGTCAGATTATGAAGCTCCAATACAAGTGGTCAATCATGAGAAATTACTGTT CTTAGTCTTTTCGTTAATTCAGAAACTTGTTGATGACGAACGACCAGAGGTATTTTTCATAGAC CACCATTTTTTTTGTAATGTGAATTTTTTTATTTCCTTTGAAAGTTGGTGACCCCATCACTTAT ATTTTTTAATCGCTATTAAATTTCCAGGTCAGGAATTCAGCTGTCAGGACATTTTTTCAGATTT TGGGAAGTCATGGAAACAAACTTTCAAAAAGCATGTGGGAGGATTGTCTATGGAACTATATCTT CCCAATGTTGGATGGCGCCTCTCACAAGGTGAGGAAATAGGTTCAATAGATTCATCTTAGAAGA CCCTTGTGACAAGTGAATCTTTTTTGTAGGCTGCAACATCATCGAAGGACGAATGGCAAGGGAA AGAAATCGGTACTCGAGGAGGGAAAGCTGTGCACATGCTTATACATCATAGGTGACAAAAAAAA TTTCGTCGTGTGGATATCTTCTGCATTGTCAATCTCTTTGTGATAGTCTTTGATGCCTGAATAA CTCGTTTACATCAAAAGATTTTTACTAATTTTCCTACCATTGAACTTGCCATCCATTTTCTGAT ATGCAGTCGCAATTCAGCCCAGAAGCAGTGGGATGAAACATTTGTACTTGTCCTTGGAGGAATA GCCCGCCTCTTCCGGTCCTACTTTCCTCTTCTTGAAAGCTTACCTAACTTCTGGTCAGGTGAGT GAATTGTAATAATCCTTGACTGCCCTGCAGTGCTTATTGTTTAGGAGAAACTGAAATATCGTGA AACTTTCTGCTTCTGTAGGATGGGAGTCTTTGCTTGCTTTTGTTAAGAAAAGCATTTTCAATGG GAGTAAAGAGGTATCACTTGCAGCGATAAATTGTCTGCAGACAGCTGTTGTGTCCCACTGTGTC AAGGTAACAACGCAGCTATTTGAACAATCTATGAGCTACAATGTACACTGTCATATCCATATTT CACTCTCTTAACTTTTTTTTTTTTTATGAACTAGGGAAACTTGCAACTTCGATATCTTAATTCG GTACTGGACGTGTATGAGCTTGTTTTCCAGAAGTCATCGAGTTACACAGGTGACACAGCAGCCA AGGTGAAACAAGAGATTCTGCATGGTTTAGGTATTTCAATTTTCAGTAAAGTCTCTACATTTTC GTAGTCTTTTTTGCTGACTCAGATAAAAAAATTCAGTGAATAGAAAAGGCTTTTAAAGTGTTCT CTTTAGCGTGACATAATTTTTGCAACATTTGGTTCTTACTCTTTCCTTTTTTTTTCTCGTTTAA TGTTTTTACAGGTGAATTATATGTGCAATCATCGAAGATGTTTGATGATAAAATGTACATGCAA TTGTTGGGAATTGTTGATTTGGCTATAAAACAGGCCATCATAAATAGCGAAAATTTCGAAACTG AATATGTAAGTTTGTTCTCTAATCATTTACTTTCTTCTTGCTCTCAAGCACTCATTTTAAGCTT ATTCCATTTATTATTTCAAGGGACATGTACCCCCTGTACTACGTCATGTTTTGGAAATCTTGCC CTCTTTGGGGCCTCCTGAACACCTTTCGTCAATGTGGCTAATCTTGCTTAGAGAGTTCTTGCAT TATCTTCCACGGGTTGATTCTGTTCTGCCAAATGACGAAGGTGAGATTCAGCAGAACAACACAG GTCACTGTGCAAGTAAGTACTTTATGTTAATCTACTCTCAACAAGTCTGAATCTAATATTCTTT TATCACCCCAGGCAGTGAAGTATTGGAACAGAAAGCTGATGCTTCGTCTGAAACAATTCCAACC ACAAGAATTACGACTAATATGTTTGCAGAAAAGCTGATCCCTGCCTTGATAGAGCTTCTCCTTC AGGCTCCTGCAGTTGAAAAGTATATCCTGTTTCCGGAAGTCATCCAGAACCTGAGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.16223128

Conservation Information
Conserved circRNAs	NA
PMCS	0.16223128

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							10010032-10013676(+)
						
					

						Potential amino acid sequence
						
							MQVSSVKSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQV
VGHFLELAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAV
LSSLRVLYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQS
LRVIMSDGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKG
SGFNNADSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRN
SAVRTFFQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHM
LIHHSRNSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVS
LAAINCLQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQ
SSKMFDDKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLI
LLREFLHYLPRVDSVLPNDEGEIQQNNTGHCASSEVLEQKADASSETIPTTRITTNMFAEKLIP
ALIELLLQAPAVEKYILFPEVIQNLRRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASL
CKFTIVLPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSW
VLVLETLAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSV
KSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLE
LAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRV
LYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMS
DGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNA
DSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTF
FQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSR
NSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINC
LQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFD
DKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFL
HYLPRVDSVLPNDEGEIQQNNTGHCASSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELL
LQAPAVEKYILFPEVIQNLRRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIV
LPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLET
LAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSA
LHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSN
QNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQ
KADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTL
PEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQ
TNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGS
HGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQ
WDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVV
SHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQ
LLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRV
DSVLPNDEGEIQQNNTGHCASSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAV
EKYILFPEVIQNLRRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIVLPTDVE
RKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDR
AIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSALHMLSH
QSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSNQNLRNM
ALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQKADVRV
GSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTLPEDCLH
VCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQTNGEDG
EKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGSHGNKLS
KSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQWDETFV
LVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVVSHCVKG
NLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQLLGIVD
LAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRVDSVLPN
DEGEIQQNNTGHCASSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAVEKYILF
PEVIQNLR(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	10010032-10013676(+)
Potential amino acid sequence	MQVSSVKSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQV VGHFLELAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAV LSSLRVLYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQS LRVIMSDGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKG SGFNNADSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRN SAVRTFFQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHM LIHHSRNSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVS LAAINCLQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQ SSKMFDDKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLI LLREFLHYLPRVDSVLPNDEGEIQQNNTGHCASSEVLEQKADASSETIPTTRITTNMFAEKLIP ALIELLLQAPAVEKYILFPEVIQNLRRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASL CKFTIVLPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSW VLVLETLAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSV KSLLSALHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLE LAEHSNQNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRV LYFSAQKADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMS DGLPTLPEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNA DSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTF FQILGSHGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSR NSAQKQWDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINC LQTAVVSHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFD DKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFL HYLPRVDSVLPNDEGEIQQNNTGHCASSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELL LQAPAVEKYILFPEVIQNLRRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIV LPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLET LAALDRAIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSA LHMLSHQSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSN QNLRNMALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQ KADVRVGSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTL PEDCLHVCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQ TNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGS HGNKLSKSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQ WDETFVLVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVV SHCVKGNLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQ LLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRV DSVLPNDEGEIQQNNTGHCASSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAV EKYILFPEVIQNLRRSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTIVLPTDVE RKSSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDR AIHSPHATTQEVATAVPKLTREPSRQYADFSILSSLNSQLFESSALMQVSSVKSLLSALHMLSH QSMTETSGSVSSASSKQIGSISFSVDRMISILVNNLHRVEPLWDQVVGHFLELAEHSNQNLRNM ALDALDQSICAVLGSEQFGEDPARSRDATLDVDSKSTEVKSVECAVLSSLRVLYFSAQKADVRV GSLKILLHVLERCGEKLYYSWSSILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTLPEDCLH VCIDVTGAYSAQKTDLNISLTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQTNGEDG EKHMGSNSGKSDYEAPIQVVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGSHGNKLS KSMWEDCLWNYIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQWDETFV LVLGGIARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVVSHCVKG NLQLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQLLGIVD LAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRVDSVLPN DEGEIQQNNTGHCASSEVLEQKADASSETIPTTRITTNMFAEKLIPALIELLLQAPAVEKYILF PEVIQNLR(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT5G27970_circ_g.9

Address

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