Detail information of AT2G11225_circ_g.4


General Information
CircRNA Name AT2G11225_circ_g.4
ID in PlantcircBase ath_circ_013160
Alias At_ciR462
Organism Arabidpsis thaliana
Position chr2: 4482031-4482494  JBrowse»
Reference genome TAIR10.38
Type   ie-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G11225
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads 12
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G11225.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCTAGGACTGAGTCTATGTGTGGCTCTAACCCTCCATTGAGGAGTCTGAGAAGAATCTCTT
CTTGGCCCCTCTCTAATAGGATCCTGATATCTTGAGgagcaacacagcttgtagtctgatcagc
cggatgactttgtaggtcttggtactgagagagattatcttgtgttggaagatcttcagaggca
aggtaatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 363
Transcript exons: 4482031-4482494
GAGCAACACAGCTTGTAGTCTGATCAGCCGGATGACTTTGTAGGTCTTGGTACTGAGAGAGATT
ATCTTGTGTTGGAAGATCTTCAGAGGCAAGCGCTTTCAGTTGGGTGTGCACAACTAACATATTG
CAGAGTGACGTCTCTAAGCTCTCCCATGATTTGGTCATTAGTAGGGATGGGAGGAGGAGGTGGT
GGAGTAACCTCATAAGAATCCAGGTTTCTCTCCAACGGGGGACGTCTTGTTCTCGAAGTTTCAG
AGCTATCATTTCTAGGACTGAGTCTATGTGTGGCTCTAACCCTCCATTGAGGAGTCTGAGAAGA
ATCTCTTCTTGGCCCCTCTCTAATAGGATCCTGATATCTTGAG

Genomic sequence GAGCAACACAGCTTGTAGTCTGATCAGCCGGATGACTTTGTAGGTCTTGGTACTGAGAGAGATT
ATCTTGTGTTGGAAGATCTTCAGAGGCAAGGTAATTTTGGTTTGAGATGAGTGCAGCTTCCAGC
ATTATAGAAGCTGTTTCTGCCATGAGTCCTTTTTCTTCTCCTTGAAAAACTCTTCGTTTTCTTG
CAGCGCTTTCAGTTGGGTGTGCACAACTAACATATTGCAGAGTGACGTCTCTAAGCTCTCCCAT
GATTTGGTCATTAGTAGGGATGGGAGGAGGAGGTGGTGGAGTAACCTCATAAGAATCCAGGTTT
CTCTCCAACGGGGGACGTCTTGTTCTCGAAGTTTCAGAGCTATCATTTCTAGGACTGAGTCTAT
GTGTGGCTCTAACCCTCCATTGAGGAGTCTGAGAAGAATCTCTTCTTGGCCCCTCTCTAATAGG
ATCCTGATATCTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.121048725
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015