Detail information of BGIOSGA021738_circ_g.2


General Information
CircRNA Name BGIOSGA021738_circ_g.2
ID in PlantcircBase osi_circ_016755
Alias Chr06:4650422_4654866(ZS97RS2), Chr06:4607381_4611842(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 5415569-5420032  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA021738
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA021738_circ_g.1 BGIOSGA021738_circ_g.3 BGIOSGA021738_circ_g.4 BGIOSGA021738_circ_g.5 BGIOSGA021738_circ_g.6 BGIOSGA021738_circ_g.7 BGIOSGA021738_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA021738-TA:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAACTCTCATCAATGTTGAGCTCTGATGGTTCGATTCTATCAATCTTGAGTAGTTTCCATGA
TGTTTTGTCAGTGTTAGTTCCGAGAATATAGAATTTccttgcattctcaccaaggacaccctcc
ccagcaacaggttctaactcccaaagtgcaggttcaccttcacatggctggaagtatcctaaaa
atctagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGCATTCTCACCAAGGACACCCTCCCCAGCAACAGGTTCTAACTCCCAAAGTGCAGGTTCA
CCTTCACATGGCTGGAAGTATCCTAAAAATCTAGAAATTTAAGAAGGTAAAAGCACCAAGTAAT
AAAAACTTAGTACATAATAATTCCCTATTTAAACTTTAGAGGGCATAAAGATATGTACAGTGAA
CAGCTTGATTAAAACGTACAAGTTTATTGCTGCTTGTTTGTAAGCATCCATATATGCATTACTG
TAGTATCTTTGCAGTGTCCTGAAGAACTCTTGCGACTGGATAGCGAACTTTAAATGTCCTCTCT
TTGCAGAGAATATCTATACCATAAAATAACACAATTAGTTCATGAAATACATTATAATTGAATA
GCTCAACAAGAAAAATATAATAAAGATATTATGTGAGAAAATTAAGGTGTTATTTATAGACTAT
AGTCATGTACTCCTGTTCCAATCAGTTTACAATATTAACTGAATGGAGATCTCAACAGTCAAAA
TAATATCATATTTACTCTTCGCACTCTAGATAGGCCTAAACTTCAAGCAATTACTAATTTGGAG
TTTTAACGTGGCAATGTGTAGCTGGACCAGAGTTACAACCTTATGTATTGAGATTTCGATCACT
TTACCAATCAGTGGCTGGTATGGCATTTCGTTTTGTTGTCTATCTAATAGGTACATACTATTGT
CTGTTTTCTCATGTATGTAATGGAAAGATAATATAAAGGGTGGCACAACACCTCCATGCATACG
CGGACGAACTCGTTGGCAAATTGCCGAATTGTACAAAAATTTAGTGTCATCATAGGAATCGAAG
ATAGTGTGGCAGCTACACATTGCCGCATAAAAACAACACATTATTTTTGGGTCCATGGATATCA
TGATTAAGATTAATCATCATAAGCTTATGATGATTAATCATATGAGAAGAGTATGGCATTTCAT
TATGATGTTTAAGATTTCATGGGCCCATGGTTTGAATTTATTTTTTTGGAATAAATGTGTTTTC
CAAGCCATGTCCTCCCATGGTTGATTTATTCATTCCATTTGAAAGGTTCATAAAAAAACTACAA
GTAAACCAGATACAATGCCTAAGGAACTAAAGATAGAATAATCCTAAAATGATTAGTGAAGCAG
AATCACTCCTATTTCAATCCATGGTCCTATGGAAAGAGTGAATGATCTACAGTGCAAATAGAAA
GATTTCAGTGAAAGCACCTTGTTATGAGCAGCTGAACCGCCATACTGTACAGCAAGTGTGTCAC
CCATCCGCTCATAAAAATGCATCAAATGGTGAGCCAAGGGGGAGTCCAAATCAAGTTCAGGGGA
TTCTATAGAACCAAGTGCATGCAACTGATGTCCAAGAGCAGCTAAACCATACGCATACTGAGCA
ACATTTGTACGGTCCAAACAGTCTATACAGTTCGTACGTAGGACACCCTTTTGAAATTTTGGAG
GCTTTACTGATATAGATCCATTGCCCTCGGCTATATCTTCTGCAGTTCCATTACCAGAAGTATC
AGAACTGCCACAAGTATCTTCTTGGGACATATCATCAATATTATCGATACAGTCTGTGATATCA
TCATTGTTGCTGTCATCACATTCATGAGGACCAAAACCATTCTTCCTATAAAGCCCATAGTGAA
AATAAGGAAAGGCACAGAAGAAAATGCTGCCTTTGTATAAATAGCCCATCAGGTAAAAATACTT
CCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTA
GACATAATAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAA
ACGGAGGGAGTAACAGAATTCAAACTAAATAGAAAAGGTAACAGATACTTACAATGGAGCATGC
AAATTGAAGGAACTCTCAGCCCTTCGAGCTGGAGGAACTTGATAGTAAAAGAACTCTGTCAAGT
TCAGAGCTTCAAAAGCCACTTTCAAAAGCATTTGGAGGGCATTTGTACTTTTTCTGAAATACAA
CTTGCTTCAGTAATGCATATTAAAAGCATTATCAAACCATACATGAAAAGTGTGAAATGCAAAG
AAGCAATACCTTTGAGAGTTTTTATGAAGATCCCAATGTAAAAATCGCAGATGATTTTCCCCTG
GTAGATCATTATTTATAATCTTTATTGCTTTATCAAATTCACTGCGGAGTATAGATTCACGTGG
CCTCCTCTCACGTTTCTTTCAAAGCATAAGAAAAATAATTGTAAGAGCATGAACTATTAAGTAC
TACGCCCATTCAAGACATGACATGGTCTCTAGAACAACTTTGGTTACCAATTCTATTCATCTAT
TGTAATATATTAATAAAGCCCACAAAAACTGCATGCTAGTAATGCATTTTCAGCTTACCTTAAT
CAAGTTTAGGATGATTATAGGATTTCCATATCTTATCCTAAGATTTTCAAAATGAAGTCTGGTA
GCTTCATAATTCTTGTCCTTTTCATGCACTGAGAAAAATAAACAAATCAAAATAATTGAATAAT
ACTGCATACATAAAAAAAATGGATTCAATGCTTACATATGATATCAGGCTTAAGATTCAGCTTG
GATGTCTCCTGAGACCAGAATAGGGGAATGGAACCTCTGTTCTGCACAACAGAGCTTATTTGCT
TTGGTCCAAGCATGTCCTCAAAAATAATTTGCTCAGTCTCAACATCATTTGCTACACTACCCTC
GTCATTCACACCTCTCTTTAAATACCTGTTCAACAAAATAACAAAATCAAAACAAGAATGCCAT
AATCCACATGCATTTCTTAGTAACGTCAACCCAAAACATGCAAAGCAAATTACTAGGAAAAATA
TATATACCTGGTGCCAGCATAATGCCTCGAGCGTCTAGCAACAAGTGTCAGCATAATGTCTTTC
CCAGATATTGCGAGTTTATCCTTGATAAAAATGGTAATTAGGTTATATTATTCCAAAATTATGT
CAGAAATAAAAAAAATTGCAATATCCAAGAGAAATAAATAATTTAGACAAAAAGGAAGTTCACG
TGGCAATGGATACACTGTCAGTTTTTCTTTAGAGAAAGGTTTCACATAAGAAGAAATGTCTCAG
CTCTACAAGATAAGTCCATGTATAATTACAAGCATATCCCATTATGATGTTCTCCTATGTACAT
TTTTTTCCATACAGCATGATTTTACTGATAAAGATGGAAAGACGCTAATAACCTATGAATGTTA
CTTGTTTACACAAGCAAATAAAAATCATGAGTGTAGCTCACTAGTAAAACAAATGAATAATTAA
GCAGGAAATTGACATCTCAACATCAATAAGACCTCGAGGATAGGCTCTTGCTAATCTGCGCAAT
TGATAGTCTAGTATTTCTCTACGGAAAGAAGGGTCTTCATTTTGTTGCGCTCTACCATGTTTCA
CTAGTCCTATTTAATGAGAACAATAAAAACACTAATTTATGGGTATGTACCTGTTTAAAAAAGC
CATAGACCAACGCAACAGTCCATATGGTACTTTTTAGAATGTTGCGAACCCCTCGTGTTAGAAA
CTCATTCCATACAAACATTGTGTCATACAGGTCCCATCCTTCCTTTGGATCATTAAAATTCTTC
TGGAAACTTCTCATGATATTATACGAGTGGCTAAAAAAGAAGTCCTTTCTAAGATCAATTGTCT
GCAAGAGCTTCTTGTATCTGCACATCAATAAAGGTTAGATTATCATGAATACACAGTGTAGTCA
TTCGACATGGGAAATAAATATGTAGCTTTGAAGTTTTATAGAAAAAGAACTAAATGTTCCATGG
TCATAAAATTTGTAAGGTAAACAGAAGGGAAAAAGAAAAACATGTAGGCCTTGTTTGGATGGGC
CTCAATCCAGCTGGCCAGCCTACGGGAATGTACTTGGAAACCAGGCTGCCAAACAAGGCTATAA
GGTAATTGGAGGGCATAAAATGTGATGCAAGATACCTGTCTTCATCCTTGGAATTTAGAAATTT
TGCCCTCGACTCGGAATTTGACAGCTCAATCATTGCAGTCCTAGTAACTTGGTAAACTGGATGG
CCAAATATAGCCCCAATTTTTCTCTGCTCGGTGATGATTAGCATGTAATAAGGTCCGAGGAACT
TAATGAAACCTGGACAGAGAAATCATCATGAATGCATTGTTTTTTTATTTGTCATATGCTTTGC
ATTATGAAATGGTTATAGAAAGATGGATAACTTACCGATGATTCCAAAACATTTTGTAACAAAT
TTTACTCCACCAGTTGACCTGTGGTCTTCATCAAGAACCTTTAGCAGATCAAGATATCCACTAT
GTGAGTACACAGTTGAACTCTCATCAATGTTGAGCTCTGATGGTTCGATTCTATCAATCTTGAG
TAGTTTCCATGATGTTTTGTCAGTGTTAGTTCCGAGAATATAGAATTT
Conservation Information
Conserved circRNAs osa_circ_030064
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021