Detail information of BGIOSGA016490_circ_g.1


General Information
CircRNA Name BGIOSGA016490_circ_g.1
ID in PlantcircBase osi_circ_005499
Alias 4:20470507|20470716
Organism Oryza sativa ssp. indica
Position chr4: 20470507-20470716  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016490
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA016490-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTCCTCATGGATGGTATGTGCGGAGAAGGTGATGTGGATGACGCCCTCGAGTTATTGAGAAA
CTTGCCCTCTCATGGTTGCAAGCCGAGTACTGTCAActacaacatcctcctcgaggcgacgtgc
aaggggagggggtaccggcaggccatggagttgatcgacctgatgcgcgccgaggggtgcacgc
cgaacaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTACAACATCCTCCTCGAGGCGACGTGCAAGGGGAGGGGGTACCGGCAGGCCATGGAGTTGATC
GACCTGATGCGCGCCGAGGGGTGCACGCCGAACAACGTGACGTATAATGTCCTCATGGATGGTA
TGTGCGGAGAAGGTGATGTGGATGACGCCCTCGAGTTATTGAGAAACTTGCCCTCTCATGGTTG
CAAGCCGAGTACTGTCAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021