Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d008758_circ_g.1 |
ID in PlantcircBase | zma_circ_009564 |
Alias | Zm08circ00013, zma_circ_0002657, GRMZM2G092704_C1 |
Organism | Zea mays |
Position | chr8: 19237187-19237712 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d008758 |
Parent gene annotation |
Syntaxin-32 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d008758_T001:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.318206616 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19237557-19237208(+) 19237675-19237222(+) 19237391-19237208(+) |
Potential amino acid sequence |
MKIEGKYFLRQLQRMSQIHSSVNDPLLLGIHRSPLCPQHHGPATLHLPHYSRVAKRTSVFDDPT LEIQELTSVIKKDITALNTAVVDLQALCNSQNESGSLSKDTTNHSTTVVDNLKNRLMSATKEFK EVLTMRTENLKVHENRRQIFSSSAAKDESNPFIRQRPLVARDPSESSVPPAPWASDSASTPLFQ SGKENVCF*(+) MGQRLCIYPTIPEWQRERLFLMILH*(+) MSATKEFKEVLTMRTENLKVHENRRQIFSSSAAKDESNPFIRQRPLVARDPSESSVPPAPWASD SASTPLFQSGKENVCF*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |