Detail information of Os03g0431800_circ_g.2


General Information
CircRNA Name Os03g0431800_circ_g.2
ID in PlantcircBase osa_circ_020412
Alias NA
Organism Oryza sativa
Position chr3: 18133893-18134155  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0431800
Parent gene annotation Conserved hypothetical protein. (Os03t0431800-00)
Parent gene strand +
Alternative splicing Os03g0431800_circ_igg.1 Os03g0431800_circ_g.1 Os03g0431800_circ_g.3 Os03g0431800_circ_g.4 Os03g0431800_circ_g.5 Os03g0431800_circ_g.6 Os03g0431800_circ_g.7 Os03g0431800_circ_g.8 Os03g0431800_circ_g.9 Os03g0431800_circ_g.10 Os03g0431800_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0431800-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTACAAAGTGCATATTTTTTCTGTTGAAATTGATAGTGTGAGAAAGCAAAGGAGCGAGAAGA
AGCAATTTTACAAAAGTTTGCCAAATTCGAGGAAAGaacaaggaactagagaagcaagtaaggt
ttttccaaagcagcgttgctcaagcatttgctgaacgagacaattcgttaatgaaggttttttt
tattgagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 146
Transcript exons: 18133893-18133976,18134094-18134155
AACAAGGAACTAGAGAAGCAAGTAAGGTTTTTCCAAAGCAGCGTTGCTCAAGCATTTGCTGAAC
GAGACAATTCGTTAATGAAGTGTGAGAAAGCAAAGGAGCGAGAAGAAGCAATTTTACAAAAGTT
TGCCAAATTCGAGGAAAG

Genomic sequence AACAAGGAACTAGAGAAGCAAGTAAGGTTTTTCCAAAGCAGCGTTGCTCAAGCATTTGCTGAAC
GAGACAATTCGTTAATGAAGGTTTTTTTTATTGAGTTTACCTGCCAAATCTAATTGTGCAGCAG
GAGAGTTGATAACTGCATACGTGACTTTTGCTCTTTGTTACAAAGTGCATATTTTTTCTGTTGA
AATTGATAGTGTGAGAAAGCAAAGGAGCGAGAAGAAGCAATTTTACAAAAGTTTGCCAAATTCG
AGGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.270089227
Functional Information
Coding potential Y
Potential coding position 18133972-18133902(+)
18133949-18134129(-)
Potential amino acid sequence MKCEKAKEREEAILQKFAKFEERTRN*(+)
MLEQRCFGKTLLASLVPCSFLEFGKLL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017