Detail information of BGIOSGA019239_circ_g.2


General Information
CircRNA Name BGIOSGA019239_circ_g.2
ID in PlantcircBase osi_circ_005994
Alias 5:3962766|3965303
Organism Oryza sativa ssp. indica
Position chr5: 3962766-3965303  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA019239
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019239_circ_g.3 BGIOSGA019239_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA019239-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACCGGGCCCAGTTGTGTCTAGGTCGGTATATTTGATGCGACAAACAGCACAAGAAAACGAAGG
TATATGCTAATGAAAATGGCTGAAGGGAACTGTAAGgataatgtggccttgccatcagattctt
tcaagaagttacaagtttctggaattgtagagtcaaaatcagttgacaccttaacaacactgca
aaagcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATAATGTGGCCTTGCCATCAGATTCTTTCAAGAAGTTACAAGTTTCTGGAATTGTAGAGTCAA
AATCAGTTGACACCTTAACAACACTGCAAAAGCAAGATGGACAAAAGGGACTTTTTGTAGACAG
GGGTGTTGGCTCTACTAAGTTTGGAAAATCATCAAGTGCATGTTCCCTGGCTTCTGGTCTTAAT
TTTGGAACAGGAAAGGTCAGTACTGTTCCTGTCCTTAACCAGTTGAGCTGCGATAATAAAAATA
AAAAGCAAGAAAGTTGTCTATGATCCTAAACCCTAAATAACTCCCTGATTTAATGAGCAATGTC
GAGTAGAGAGTTCAAGTGCTTAAATGAAATGTTGTGTGTGGATCTATATAATATATATTATGGT
CCATCTATCCATTCATCAATTTTCGATTGTTAAAAGAAATTTTCCATCGGAATTAAGTTTGTAC
TTGATTCTTTCTTCTTAATTGATGTATTAGCAGGCCATGCCAGAAGCAGCAGGAGCTGTTGCAG
CTGCAGCTGTAGCTGACCGATTGCATGGGTCAAAGGAGGACCGAAAACTAGCTATTGTTTTGGT
AAATTACTGCTGTTATTTCCTCTCTTATACGACTTTCAGTATTTAATCACCAGACATCAGGAGA
AGCCAACTTTGCTTGTTGGCTGTTGCTATCTACCAGCAGACCTTTCTATCATGTCTATATGGTT
TTAAACACATAAATGAATAAAAATAAATGAAAATACACTGAGTTATCTGGGAGCTAAAAAGCTA
ATCTCCAACTATCATAGTATAATAATTATTTGTTATTGCATCTTAAGATTCATTTGTATCACTG
CTTATTTTGAAAAGCAGATTTTCTTCCTAAACATGTCTACTTGCAAACAGGTTGGCCTACCAGC
TCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACC
AGACATTTCAATGTTGGAAAGGTGATTATATTCTTTTCCTGATTAATTGTTTTGCCACAATGGC
GTATGTTGGATTGTTTGGCAAGTGAACATAACTCTCTTTTGGTTGAAACTCGGTGTGCAGTACC
GCCGCCTGAAGCATGGAGCAAATCAGGTACTAATAACTAATTTGCTGCAATTCTCTTTGCACAC
ACTGATTTTCTTTGAAGTATTTCTTCTTGTTAAATGCTACCGTGTCAGAAATTTTCATTTCAAG
TTTTGTAAGCCAATTTTATTTGAAGTTACTCCATTTTTATATTTCATTTGTTACATCGCTATTT
TATTTTGGTGTATTAAGAATGATATTATCTTATGTTCTGATTCATGAGACACATGCCAAGTATT
CACATGGAAAATGTAATTTCAACACTCCTGTAGCACTGTGCCTAAATAGGGTAGATACTCCACC
ATAGAGCTATCAATCAATCTGCTCAGCAACAATTTATGTGCCAACTGGGCCAGAATGTCAAATA
ATGCAGATTCATTATCTTTTACTTGTTTCTTTTACAATGGTTATTTTATGCATGGGATACTCGG
GTCTGCTTCTAGTCCTATTGCAGATTCCTGGTACTTCTAGTTTGTATATATTTCCTTGGAGTTC
TCAGTGCAGTTACACACATTTCTGGTGGTAGAATAATCTAACAGTTCTTTTTTGGGTTAATTGG
TTCAGTCTGCAGATTTTTTCCGTGATGATAACCCTGAAGGGATTGAGGCACGTAATGAGGTTAG
CATGCTATCTGTACAGTATTTTTGCAACTCTATCATATTCCTTCAATTCAAAGTTTCGATTTCA
TCCCAGATATTGTAGTTCAAAAATGTATGTTGTTATTGCTCTACATTTTGAGAATAATATATAA
CATGGTAATAAGATAAACTATTAGGGCTACCATGGTAATTTTGAACTACAAATTAATCCTGATG
ACTGTCTACAACATCATTTATTTAAAGATAAAGGGAGTACAACAATTACAGTTTCTGTGAAAAC
TTTTATTTAGATTTAGAACACATCATATTTGTAATTTTAAATCTTGTTTTGTATTTGTATAATC
TGTTTGCTGCCTCCTTCTGTGATATAGTTGCATTTTGCCATTGCTCCTCCTCCACCTTAAGGTC
ATGCTAAGGCATTTCATTTGAATTATCTTTTTTCCCAAGGAGAAGTAAACCTATACTATTCTCA
TGAAAGCACCACAAAGTTCATAAATATCAATATAGCGTACTAAATTTTCAGAGGTCAAATTTGA
TTGGATGAGAACCAAACGTCATGAAGCGAGTATTAACATTAAATTTATATATATTTAGTCTTAC
TAGCAAATTTCAACGTTTACGTTTTTTCCAGGTGGCTGCTTTAGCTATGGAGGACATGATAGAT
TGGATGCATGGGGGAGGACAGGTAAGCTGGTTTCTGTTGCATAGCCTGCTTCAAATGTAATGTT
CGTTTTGACCGGGCCCAGTTGTGTCTAGGTCGGTATATTTGATGCGACAAACAGCACAAGAAAA
CGAAGGTATATGCTAATGAAAATGGCTGAAGGGAACTGTAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 3963253-3963878(-)
3962786-3965116(-)
3963251-3965300(+)
Potential amino acid sequence MAFPVPKLRPEAREHALDDFPNLVEPTPLSTKSPFCPSCFCSVVKVSTDFDSTIPETCNFLKES
DGKATLSLQFPSAIFISIYLRFLVLFVASNIPTCPPPCIQSIMSSIAKAATSLRASIPSGLSSR
KKSAD*(-)
MARPHYPYSSLQPFSLAYTFVFLCCLSHQIYRPVLPHASNLSCPP*(-)
MPEAAGAVAAAAVADRLHGSKEDRKLAIVLVGLPARGKTFTAAKLTRYLRWLGHETRHFNVGKY
RRLKHGANQSADFFRDDNPEGIEARNEVAALAMEDMIDWMHGGGQVGIFDATNSTRKRRYMLMK
MAEGNCKDNVALPSDSFKKLQVSGIVESKSVDTLTTLQKQDGQKGLFVDRGVGSTKFGKSSSAC
SLASGLNFGTGKAMPEAAGAVAAAAVADRLHGSKEDRKLAIVLVGLPARGKTFTAAKLTRYLRW
LGHETRHFNVGKYRRLKHGANQSADFFRDDNPEGIEARNEVAALAMEDMIDWMHGGGQVGIFDA
TNSTRKRRYMLMKMAEGNCKDNVALPSDSFKKLQVSGIVESKSVDTLTTLQKQDGQKGLFVDRG
VGSTKFGKSSSACSLASGLNFGTGKAMPEAAGAVAAAAVADRLHGSKEDRKLAIVLVGLPARGK
TFTAAKLTRYLRWLGHETRHFNVGKYRRLKHGANQSADFFRDDNPEGIEARNEVAALAMEDMID
WMHGGGQVGIFDATNSTRKRRYMLMKMAEGNCKDNVALPSDSFKKLQVSGIVESKSVDTLTTLQ
KQDGQKGLFVDRGVGSTKFGKSSSACSLASGLNFGTGKAMPEAAGAVAAAAVADRLHGSKEDRK
LAIVLVGLPARGKTFTAAKLTRYLRWLGHETRHFNVGKYRRLKHGANQSADFFRDDNPEGIEAR
NEVAALAMEDMIDWMHGGGQVGIFDATNSTRKRRYMLMKMAEGNCK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021