Plant Circular RNA Database

Detail information of Os03g0327900_circ_ig.4

			
						 General Information
					
						CircRNA Name
						Os03g0327900_circ_ig.4
					
						ID in PlantcircBase
						osa_circ_041399
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 12001641-12003519  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI-long
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os03g0327900_circ_ig.1 Os03g0327900_circ_ig.2 Os03g0327900_circ_ig.3 Os03g0327900_circ_ig.5 Os03g0327900_circ_ig.6 Os03g0327900_circ_ig.7 						
					
						Support reads
						NA
					
						Tissues
						root
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os03g0327900_circ_ig.4
ID in PlantcircBase	osa_circ_041399
Alias	NA
Organism	Oryza sativa
Position	chr3: 12001641-12003519 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ig-circRNA
Identification method	CIRI-long
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os03g0327900_circ_ig.1 Os03g0327900_circ_ig.2 Os03g0327900_circ_ig.3 Os03g0327900_circ_ig.5 Os03g0327900_circ_ig.6 Os03g0327900_circ_ig.7
Support reads	NA
Tissues	root
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAGCCCTGATGCTGAGCGCCCTGCATCTCCAAAGTACTCCGATCGATTATCCCCATCAGTTAAT
GCATATTTGTCTGAGGCATCACGCCATGAAATAAGGgtttcattgtatatggacaagtttgcag
gagtttgccagtcaattctccatgattgcaaattgacattccttcagataatatgtgaccatga
tctttttg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 645
Transcript exons: 12001641-12001771,12002126-12002201,12002330-12002440,12
002577-12002759,12003376-12003519
GTTTCATTGTATATGGACAAGTTTGCAGGAGTTTGCCAGTCAATTCTCCATGATTGCAAATTGA
CATTCCTTCAGATAATATGTGACCATGATCTTTTTGTTGAGATGCCTGGTCGTGACCCCTCTGA
TAGAAATTATCTCTCGTCAGTACTTATTCAAGAGATTTTTCTCACCCTTGACCATGATGATCTA
TCTCAGCGAGCGAAAGCAGCCCGTATTTTGGTTGTTCTAATATGCAAGCATGAATTTGATGCAC
GATATCAAAAAAGTGAAGACAAGCTGTATATTGCTCAGCTGTATTTTTCTCTTATAGGACAGAT
TCTAGATGAGATGCCTGTATTCTATAATCTAAATGCTGTTGAAAAGCGTGAGGTGCTGGTAGTC
ATTTTGCAAATCATAAGGAACTTGGACGACATGACTCTGATCAAAGCATGGCAACAGAGCATTG
CTAGAACCAGATTGTTCTTCAAGCTACTTGAAGAATGCATTACCCATTTTGAGCACAACAAAAC
AGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTGATGCTGAGCGCCCTGCATCTCCA
AAGTACTCCGATCGATTATCCCCATCAGTTAATGCATATTTGTCTGAGGCATCACGCCATGAAA
TAAGG
						
					

						Genomic sequence
						
							GTTTCATTGTATATGGACAAGTTTGCAGGAGTTTGCCAGTCAATTCTCCATGATTGCAAATTGA
CATTCCTTCAGATAATATGTGACCATGATCTTTTTGTTGAGATGCCTGGTCGTGACCCCTCTGA
TAGGTATGTTGGCCCTTAGGTCCCTCATTTGTGGATGTTTGCCTTCCCAATATATGTTGGCAAT
ACTTATCTGCTTTTCAAACATATTTTGGTGGACTGGCAATTTATTCAGAGACTTTAGGCTTCTT
TCTTTAAGTTCGAAATATTTCTTAACATGAAGGCATTCATTCTCTGTTATTTATACAAATCTTG
GTATGGGGATTTTATACATTTCTAATCCTTATAATGGTCATTCCTGTTTTTTTTTTAAATAAAT
AACCCTATCCCTGCATGCTCTTTGCCTTAGGTTGCTAAAAGTTTTAGGCACTTTATATCTTGTG
AATTAGCATGTTTGAGCTAAATACTCTGTTTTTGCAGAAATTATCTCTCGTCAGTACTTATTCA
AGAGATTTTTCTCACCCTTGACCATGATGATCTATCTCAGCGAGCGAAAGTAAGAATCTTAATT
GCAAGACAAACACTTTGGTTCACCACTCAATACATTCTCTTCTACCTTTTCAACCTGTCTTACT
TGTGATGGAAAATAACTTTTCTTGCTTATGGGAATTTTATTTACTGTAGGCAGCCCGTATTTTG
GTTGTTCTAATATGCAAGCATGAATTTGATGCACGATATCAAAAAAGTGAAGACAAGCTGTATA
TTGCTCAGCTGTATTTTTCTCTTATAGGACAGGTATTTGCACATTTACTTCGTAATAACTACAT
TGCAATGAATATTGGTAATTAGTACATTGTTCTCTGCAAGATTTATCATACACAGGGTTGTAGT
TACAAAATTTGTTGCTTGTGGAAAACTCTGATTTTTGCAGATTCTAGATGAGATGCCTGTATTC
TATAATCTAAATGCTGTTGAAAAGCGTGAGGTGCTGGTAGTCATTTTGCAAATCATAAGGAACT
TGGACGACATGACTCTGATCAAAGCATGGCAACAGAGCATTGCTAGAACCAGATTGTTCTTCAA
GCTACTTGAAGAATGCATTACCCATTTTGAGGTCTGTAGCATGATTTCATTCAGAACTTAGAAA
GAAGTATTTTCAATATTTTTGGCATTGGTGTGAAGTGTTTTCAATATTATTAACATTGGTGAAG
ACATACTGGTATTATCGCTGCCAGTAAATTTGTATCGAACGTATTTCTGACATTCCCTGTAACT
CCACTGCTATGGTGGTTGTGTTGAAATGCACCCTGATTAATGCGTCCACACAATAGAGTAAAGG
GTTGTGTGTTAAGGATTTTCTTGGTGGAGCACATCTCCTTTCCCTACATTTGATAGTTAATATA
TATTTTTTTTAAAAAAATGGCAAACAACTCTTTCAGGTGACGGATTTTGGAGTATATCTGAATC
CAATTTCTTTTCATTGCGGTGGTGTTATATATTTGTGTTTGGGCATTTCAAAACTGACACATAC
ACACATATAAATTACTTAGTGGCAAGCACCTCCCCCTTTTTAATTGGTAGTATTGCATGATAAC
AGTATCTAATCCATCTAACCTCAGATATACAAATTTTGATCTGGTAAGATTTGTGCGTTGATTT
ATCACTGATTATGAGTACTCTTATATTATTACAGTTTATTTGATGCTAAATCTCTTTAATGTAT
TCTGCAGCACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTGATGCT
GAGCGCCCTGCATCTCCAAAGTACTCCGATCGATTATCCCCATCAGTTAATGCATATTTGTCTG
AGGCATCACGCCATGAAATAAGG
						
					

			
		

Sequences
Splice junction sequence	GAGCCCTGATGCTGAGCGCCCTGCATCTCCAAAGTACTCCGATCGATTATCCCCATCAGTTAAT GCATATTTGTCTGAGGCATCACGCCATGAAATAAGGgtttcattgtatatggacaagtttgcag gagtttgccagtcaattctccatgattgcaaattgacattccttcagataatatgtgaccatga tctttttg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 645 Transcript exons: 12001641-12001771,12002126-12002201,12002330-12002440,12 002577-12002759,12003376-12003519 GTTTCATTGTATATGGACAAGTTTGCAGGAGTTTGCCAGTCAATTCTCCATGATTGCAAATTGA CATTCCTTCAGATAATATGTGACCATGATCTTTTTGTTGAGATGCCTGGTCGTGACCCCTCTGA TAGAAATTATCTCTCGTCAGTACTTATTCAAGAGATTTTTCTCACCCTTGACCATGATGATCTA TCTCAGCGAGCGAAAGCAGCCCGTATTTTGGTTGTTCTAATATGCAAGCATGAATTTGATGCAC GATATCAAAAAAGTGAAGACAAGCTGTATATTGCTCAGCTGTATTTTTCTCTTATAGGACAGAT TCTAGATGAGATGCCTGTATTCTATAATCTAAATGCTGTTGAAAAGCGTGAGGTGCTGGTAGTC ATTTTGCAAATCATAAGGAACTTGGACGACATGACTCTGATCAAAGCATGGCAACAGAGCATTG CTAGAACCAGATTGTTCTTCAAGCTACTTGAAGAATGCATTACCCATTTTGAGCACAACAAAAC AGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTGATGCTGAGCGCCCTGCATCTCCA AAGTACTCCGATCGATTATCCCCATCAGTTAATGCATATTTGTCTGAGGCATCACGCCATGAAA TAAGG
Genomic sequence	GTTTCATTGTATATGGACAAGTTTGCAGGAGTTTGCCAGTCAATTCTCCATGATTGCAAATTGA CATTCCTTCAGATAATATGTGACCATGATCTTTTTGTTGAGATGCCTGGTCGTGACCCCTCTGA TAGGTATGTTGGCCCTTAGGTCCCTCATTTGTGGATGTTTGCCTTCCCAATATATGTTGGCAAT ACTTATCTGCTTTTCAAACATATTTTGGTGGACTGGCAATTTATTCAGAGACTTTAGGCTTCTT TCTTTAAGTTCGAAATATTTCTTAACATGAAGGCATTCATTCTCTGTTATTTATACAAATCTTG GTATGGGGATTTTATACATTTCTAATCCTTATAATGGTCATTCCTGTTTTTTTTTTAAATAAAT AACCCTATCCCTGCATGCTCTTTGCCTTAGGTTGCTAAAAGTTTTAGGCACTTTATATCTTGTG AATTAGCATGTTTGAGCTAAATACTCTGTTTTTGCAGAAATTATCTCTCGTCAGTACTTATTCA AGAGATTTTTCTCACCCTTGACCATGATGATCTATCTCAGCGAGCGAAAGTAAGAATCTTAATT GCAAGACAAACACTTTGGTTCACCACTCAATACATTCTCTTCTACCTTTTCAACCTGTCTTACT TGTGATGGAAAATAACTTTTCTTGCTTATGGGAATTTTATTTACTGTAGGCAGCCCGTATTTTG GTTGTTCTAATATGCAAGCATGAATTTGATGCACGATATCAAAAAAGTGAAGACAAGCTGTATA TTGCTCAGCTGTATTTTTCTCTTATAGGACAGGTATTTGCACATTTACTTCGTAATAACTACAT TGCAATGAATATTGGTAATTAGTACATTGTTCTCTGCAAGATTTATCATACACAGGGTTGTAGT TACAAAATTTGTTGCTTGTGGAAAACTCTGATTTTTGCAGATTCTAGATGAGATGCCTGTATTC TATAATCTAAATGCTGTTGAAAAGCGTGAGGTGCTGGTAGTCATTTTGCAAATCATAAGGAACT TGGACGACATGACTCTGATCAAAGCATGGCAACAGAGCATTGCTAGAACCAGATTGTTCTTCAA GCTACTTGAAGAATGCATTACCCATTTTGAGGTCTGTAGCATGATTTCATTCAGAACTTAGAAA GAAGTATTTTCAATATTTTTGGCATTGGTGTGAAGTGTTTTCAATATTATTAACATTGGTGAAG ACATACTGGTATTATCGCTGCCAGTAAATTTGTATCGAACGTATTTCTGACATTCCCTGTAACT CCACTGCTATGGTGGTTGTGTTGAAATGCACCCTGATTAATGCGTCCACACAATAGAGTAAAGG GTTGTGTGTTAAGGATTTTCTTGGTGGAGCACATCTCCTTTCCCTACATTTGATAGTTAATATA TATTTTTTTTAAAAAAATGGCAAACAACTCTTTCAGGTGACGGATTTTGGAGTATATCTGAATC CAATTTCTTTTCATTGCGGTGGTGTTATATATTTGTGTTTGGGCATTTCAAAACTGACACATAC ACACATATAAATTACTTAGTGGCAAGCACCTCCCCCTTTTTAATTGGTAGTATTGCATGATAAC AGTATCTAATCCATCTAACCTCAGATATACAAATTTTGATCTGGTAAGATTTGTGCGTTGATTT ATCACTGATTATGAGTACTCTTATATTATTACAGTTTATTTGATGCTAAATCTCTTTAATGTAT TCTGCAGCACAACAAAACAGGAGACAGCTTGTTACTAGGCTCAAGTTCACGGAGCCCTGATGCT GAGCGCCCTGCATCTCCAAAGTACTCCGATCGATTATCCCCATCAGTTAATGCATATTTGTCTG AGGCATCACGCCATGAAATAAGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.162814303

Conservation Information
Conserved circRNAs	NA
PMCS	0.162814303

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						this study

circRNA

Detail information of Os03g0327900_circ_ig.4

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