Detail information of Os08g0398700_circ_g.3


General Information
CircRNA Name Os08g0398700_circ_g.3
ID in PlantcircBase osa_circ_037003
Alias NA
Organism Oryza sativa
Position chr8: 19029116-19029485  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0398700
Parent gene annotation Peptidase M1, membrane alanine aminopeptidase family protein. (O
s08t0398700-01);Similar to APM1 (AMINOPEPTIDASE M1). (Os08t03987
00-02)
Parent gene strand +
Alternative splicing Os08g0398700_circ_ag.1 Os08g0398700_circ_igg.1 Os08g0398800_circ_g.1 Os08g0399050_circ_ig.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0398700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGATGCGGACTGTTACTACCTCCAGCAGAGCTGGTTATGATGCCCTCCTGAAAATCTACAGAG
AAACAGCTGAAGCTCAGGAGAAGTCACGCATCTTAGaacactaggctgggatcccaaggagggc
gagagccatcttgatgtaatgcttagatcattgctcttgattgcccttgtcaaacttggacatg
atgagact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACACTAGGCTGGGATCCCAAGGAGGGCGAGAGCCATCTTGATGTAATGCTTAGATCATTGCTC
TTGATTGCCCTTGTCAAACTTGGACATGATGAGACTATAAATGAGGGAGTTAGGCGGTTCCATA
TCTTCATAAAAGACCGCAAAACTAACATTCTTCCCCCAGACACTAGAAAGGTTCAGGCTTTTGC
TTAACATACTACTGCAGTGTTACCTCTATGATATCTAGCATACTGATATGCATTGGTCTGCAGG
CTTCATATCTTGCTGTGATGCGGACTGTTACTACCTCCAGCAGAGCTGGTTATGATGCCCTCCT
GAAAATCTACAGAGAAACAGCTGAAGCTCAGGAGAAGTCACGCATCTTAG
Conservation Information
Conserved circRNAs osi_circ_017888
PMCS 0.196398243
Functional Information
Coding potential Y
Potential coding position 19029163-19029120(+)
19029273-19029404(-)
Potential amino acid sequence MLRSLLLIALVKLGHDETINEGVRRFHIFIKDRKTNILPPDTRKASYLAVMRTVTTSSRAGYDA
LLKIYRETAEAQEKSRILEH*(+)
MLVLRSFMKIWNRLTPSFIVSSCPSLTRAIKSNDLSITSRWLSPSLGSQPSVLRCVTSPELQLF
LCRFSGGHHNQLCWR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017