Detail information of BGIOSGA016727_circ_g.1


General Information
CircRNA Name BGIOSGA016727_circ_g.1
ID in PlantcircBase osi_circ_014543
Alias Chr04:25771527_25772024(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23847648-23848145  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016727
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA016727-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAACTCCTATTTTGAGCCCTGCTGAACTTGAAGAAACTGGTTATAAACTCATAGCATACCCA
TTATCTCTGATTGGGGTATCAATGCGTGCAATGGAGggtatctccaaaagcatgcggacataca
cagggaaggaaagttgtctcaagggaggaagcaattatgcatataaaagctgctgtagatgcca
ggaaggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATCTCCAAAAGCATGCGGACATACACAGGGAAGGAAAGTTGTCTCAAGGGAGGAAGCAATT
ATGCATATAAAAGCTGCTGTAGATGCCAGGAAGGAGAGTGGCTCTGACATTGTTATTGTGGCAA
GGACAGACTCTCGTCAAGCTTTGTCTCTTGATGAAGCATTATGGAGAGTACGCGCTTTTGCAGA
TGCTGGAGCAGATGTTCTATTTATTGATGCCCTTGCTTCAAGAGAAGAGATGAAGGCATTTTGT
GCAGTATCACCTGGAGTTCCAAAAATGGTTAGATCTGTTACATGCTATCTTGCTTATCCAAGTT
GTCTGTGATGGCCATGAAACAATTGTCTCATCATATTCTGTGCTATCTTCTGCAGGCTAACATG
TTAGAAGGTGGTGGTAAAACTCCTATTTTGAGCCCTGCTGAACTTGAAGAAACTGGTTATAAAC
TCATAGCATACCCATTATCTCTGATTGGGGTATCAATGCGTGCAATGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021