Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0212100_circ_g.9 |
| ID in PlantcircBase | osa_circ_000810 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr1: 6120989-6125039 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | u-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os01g0212100 |
| Parent gene annotation |
DEAD-like helicase, N-terminal domain containing protein. (Os01t 0212100-01);Similar to P20Sh148J07 (Fragment). (Os01t0212100-02) |
| Parent gene strand | + |
| Alternative splicing | Os01g0212100_circ_g.1 Os01g0212100_circ_g.2 Os01g0212100_circ_g.3 Os01g0212100_circ_g.4 Os01g0212100_circ_g.5 Os01g0212100_circ_g.6 Os01g0212100_circ_g.7 Os01g0212100_circ_g.8 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os01t0212100-01:8 Os01t0212100-02:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.21103804 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
6124945-6125026(+) 6121045-6125028(-) 6122218-6125032(-) |
| Potential amino acid sequence |
MLLPLNHHGLRKLHHIFISSGHPILPFTNYMMLKALGIDNILGFDWPASPSPEAMIRALEVLYS LGILDEDAKLTVPLGFQVAEIPLDPMISKMILSANNFGCSDEILTIAAFLSVQSVWVSMRGVKK EFDEAKLRFAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIDIREQLVRIIKRFG IPLTSCDRDMEAVRKAIIAGAFAYACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVIY QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH*(+) MEKLANQIPKCCLFLELSTSYS*(-) MVNISSEHPKLLAERIIFEIIGSRGISATWKPRGTVSLASSSRIPREYRTSRARIIASGDGEAG QSNPKMLSIPRAFNII*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |