Detail information of Os01g0212100_circ_g.9


General Information
CircRNA Name Os01g0212100_circ_g.9
ID in PlantcircBase osa_circ_000810
Alias NA
Organism Oryza sativa
Position chr1: 6120989-6125039  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os01g0212100
Parent gene annotation DEAD-like helicase, N-terminal domain containing protein. (Os01t
0212100-01);Similar to P20Sh148J07 (Fragment). (Os01t0212100-02)
Parent gene strand +
Alternative splicing Os01g0212100_circ_g.1 Os01g0212100_circ_g.2 Os01g0212100_circ_g.3 Os01g0212100_circ_g.4 Os01g0212100_circ_g.5 Os01g0212100_circ_g.6 Os01g0212100_circ_g.7 Os01g0212100_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0212100-01:8
Os01t0212100-02:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTAATGTTATTGCCATTGAACCATCATGGCTTACGGAAGCTGCACCACATTTTTATCAGTTCC
GGACACCCAATCCTGCCCTTCACTAACTATATGATGttgaaagctctaggaatagacaacattt
tgggatttgattggccagcttctccatcaccagaggcaatgattcgagctcttgaagttctata
ttccctgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAAAGCTCTAGGAATAGACAACATTTTGGGATTTGATTGGCCAGCTTCTCCATCACCAGAGG
CAATGATTCGAGCTCTTGAAGTTCTATATTCCCTGGGAATCCTTGATGAAGATGCCAAACTAAC
AGTACCCCTTGGCTTCCAAGTTGCTGAGATCCCTCTGGTATGTAGCTTATTACTTTATTTTTGT
GACCTGAATTATATCTACACTTGGATTTTCAGAACCTTTTACAATTAACTACTTGAACTAGTTA
TTGTAGTACCAAGCTAGTACTTTATTTTTCTGTTGTGAATTCTATCTATAACTAATGAGTAATG
ATACTTTTCTAAAAAAAAACAGCATGGGTTATAATTTATAATCTTCCGTAAGTTCATGATTTAA
TTAAATGCTCATTGAAAAAAAAAACTATTATCTGTTTGATTGTATCTGCGGGGACACATGGATT
TGGACGTAAGAAATGTAATAAGGCTCTTTAAATGATGTTGCAGCTTTAATGGTCGTTGAAAAAA
ACAGCAATTATTTAGGATGTAGTACATCTCACAGTTGAAGAATGTATCATATTAAAGTATCTCG
AGTTGAATAAAACATTTAGGTCATATAGAATGAACGATGTTATGGTAAAACAGGACATATGTGT
ACTATGATTAACTAAGCACTAAGGTCATTGTGAAACTAAGAACAGTTACGTCTTTGTGTAGACT
GATGTTCAAAGACAAACTAAGGACATGCATGATTATTGTAACTGCTAGCCCAGAATAGTCCTTG
TGGGAGTAGGCTGGATTATAGTATCTTTCTAAATTGTTCATGAAAGTACATTTGCAAATTGCTA
CTTAATCTTCTTAGCTTCGATAGATGCATGGTGGTAAGTATCTGTTTCCTGCAGCCAATAACTA
TTTCGATATGTTCTACTGTATTGCTAAGCTTTATGAACTGTGGTGGTTGTTTGATGACTATGTC
TCTACCTTGCCATATTTTATTACATATCAGTTCTGACAGCGTTTGACATCATGCTGCTGCATTG
GTCATTATACTTGAAGCTGAAGGACTCATGTCCTATTATACTTCTTCAAATGTTTTTGTTATCT
TTTTACTTAAATGTACTTTTATGGCGAACAATTCTCTCAAGATATTTATATGCACATTCTAATC
TCTTGCAGGACCCTATGATTTCAAAAATGATCCTTTCAGCCAATAATTTCGGATGCTCTGATGA
GATATTGACCATAGCAGCATTTCTATCTGTTCAAGTTAGGACTTCTCTAAGATGCTTCTTTGTT
TGCTACTTGTGTACTCTTTATGCTTTGGGCTGTTCTAATCTTCAGTTGTACTGACACTATTGAT
TTGTACAGTCTGTGTGGGTTTCCATGAGAGGAGTGAAAAAAGAGTTTGATGAAGCTAAGCTCCG
TTTTGCTGCTGCTGAGGTATGCTTGATCAACTTGCTGCTAACCTTCCTTGGTTCACTCATTAGT
CATTAAGCTGGTATTATATAGTTGCTGCTAATATTTACACACAAAATAAAGGAGTGTTTTGTCA
ATAAATAGACCCAAATCCTAATATGCTTGATCTCTGATGATGTTCCAGAACTAGACAGTTGCTA
TTATGTTTGCAATTGATTTCTCGTACCACTTTTATGCACTGATTTATGATGGGGGCATATGACC
AGTAAGTTGACTCTAGTAATGTGCTGCTGGTTACTATCTGAGCACAAATTGTCAGAAGTGTGCA
TTGCACCTAACTGCCTATATTTGTTCTTGGTTGTTTCTTTTTGTGGTCGTTGTTGACACTCCTG
AATATATCTTGTACCCCAGGGAGATCATGTGACGTTCCTGAATATCTACAAAGGATTTCATCAA
TCTGGAAAATCTAGTCAGTGGTGTTACAAGAACTTTTTGAACCACCAAGCATTGGTCTGTGCTC
ACTGCATAGAGACGATATTTCACACTTGAGATTGTGCACTTATCCAATGTTTTTTGTTTACATT
GCTACACTTACACATATTGATTTGAAGAAAATCCTCTCCCTTTTTGCTGCAGAAGAAGGTTATT
GACATCAGGGAGCAGCTTGTCAGGATTATCAAGAGGTTTGGCATACCACTAACATCATGTGATA
GAGATATGGAGGTATTGTTTCACATTTCCATTAATTTGTATTGGTACTTACAGGATTCACGTTT
TCATTAATTTGCTTTGGTACTTAGAGAACATTAGCTCTCAAATGTATTCTCTAATTCCACTGTA
ATGTACAGGGAGGAACTGTTCATGTGATAATATTCACCTGAAGAATACCCTTAGGCACAAAATC
AGATTGCACTCTTATCTTTAAATTGAAGTTAGGGTTCCCCTTGGAACATTCAGATGAATTAACT
CTCACGTCTTTCGCTACAGCTATAGATGCACCCTCTCCTCTAAGCAGCTCTTTGAGAAATCACT
TATAGTCTCTTTTCTACGGTGTTATTATTGAAGCCATTATTTTGCTTATCCCAATGTCTCGTAC
ATCTTTCGATAATGTCACTGTGGCAGTTATTCTATTCTAGCCCAACATAATTTTTCCTCATTTT
AATACTTAATGCATTTATACTTGGATAGTTTGGGGTGTAAAATATTAGTTTTGACTATTTAGGT
GATTCATTAATAATGTAATCCTATGTTAACACAGAATATATCCAAATGCAAAGAGTATATGTAA
ATACATGTATTAAGTGGGGATATCCTGAGCAAACCACTATTTGTACTAACACAACTACCATTGG
CCCACATCTTTGTTAGTTTGTTTCAATCTTAGAGCTGGTTATTTTATTAAGTTCTGTTTACAAT
TCTTTTCCTCCATGTTACTAATACCATAAGTCCATAACTTACTGAAGCTTTGATTTGCATATGC
TAAACACATTATCATCTCGATATTCTGCAGGCAGTAAGAAAAGCTATTATTGCTGGTGCATTTG
CTTATGCATGCCATCTAGAGGTATTTGCTTGATTAATCTTATATCCCATTGCATTACAGGGCAG
ATTTTATTCTCATACATCTCCAACATATAGTCAGAACGTAATATCCCTGAAAAAGCCTAATATA
AGGTTTGGAACTGAAAGTTGTTTATTGTAATGTCGACAAACTGGAATCTGATGTTCCTGCATGA
TTTTGAAAATATGAAACCTAGAGGATTGGACCAGCCCAGAGAAAGAAAAGAACCCTGCAATCAC
CTGACCTTACTGGGATTTTGATGAACTGACCCACCTGTGTTATATTCAAAAGAACAGTCCAGTT
GTTACAATGAATTATTAGAAACTAGTAAGTGGTAATCTGAGTTGAGTTGTACATGAGAATCACT
AAGGCCATTGTCCTGGTATATAAGACATACTACCCTCTAATTTGTCTGAGATGAAGTTGGGTCC
TCCTACAGTCAGGTCTGTGAGGGAGCTCGGTCACAAAGCATAATCGGATCGACTGAATCAAACA
TCTGTGTTGAGTTGGGCATATATATACAGTTGGAAGTGCATCGCTACCTGTTTCATGTGTCATT
ATTTTTCTGTGCAGGCAGTTTAGAAATTCAATAAGGTGGACCTATCTTTTATTCTTCCACTAAG
ATTAGTTACCTACTATAGCTATGAAAAATTGACAGAAATCTGAACTATATATTTGAATTCCTGT
GGAAATGATGTGTTCTTGCACATATGTACTTCATCTAAGTTTTATATGATTCTTTTCTCTGCTA
TATTATAGGAATACAGCCAGAATGGGATGTACAAAACAATAAGGACCTCACAAGAAGTTTATAT
TCATCCTTCTTCTGTGCTATTTAGGTGAGTTTAATTACAATATTCTATTTTATTGTAATGGGTT
TTCTTGTTATGTAGTTTTTCTATAGACTTCTTGACATCTTCCTTGCATTTTAGGGTTAATCCAA
AGTGGGTCATCTACCAGTCTCTAGTTTCAACTGATAAGCACTATATGCGTAATGTTATTGCCAT
TGAACCATCATGGCTTACGGAAGCTGCACCACATTTTTATCAGTTCCGGACACCCAATCCTGCC
CTTCACTAACTATATGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.21103804
Functional Information
Coding potential Y
Potential coding position 6124945-6125026(+)
6121045-6125028(-)
6122218-6125032(-)
Potential amino acid sequence MLLPLNHHGLRKLHHIFISSGHPILPFTNYMMLKALGIDNILGFDWPASPSPEAMIRALEVLYS
LGILDEDAKLTVPLGFQVAEIPLDPMISKMILSANNFGCSDEILTIAAFLSVQSVWVSMRGVKK
EFDEAKLRFAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIDIREQLVRIIKRFG
IPLTSCDRDMEAVRKAIIAGAFAYACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVIY
QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH*(+)
MEKLANQIPKCCLFLELSTSYS*(-)
MVNISSEHPKLLAERIIFEIIGSRGISATWKPRGTVSLASSSRIPREYRTSRARIIASGDGEAG
QSNPKMLSIPRAFNII*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017