Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0212100_circ_g.9 |
ID in PlantcircBase | osa_circ_000810 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 6120989-6125039 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0212100 |
Parent gene annotation |
DEAD-like helicase, N-terminal domain containing protein. (Os01t 0212100-01);Similar to P20Sh148J07 (Fragment). (Os01t0212100-02) |
Parent gene strand | + |
Alternative splicing | Os01g0212100_circ_g.1 Os01g0212100_circ_g.2 Os01g0212100_circ_g.3 Os01g0212100_circ_g.4 Os01g0212100_circ_g.5 Os01g0212100_circ_g.6 Os01g0212100_circ_g.7 Os01g0212100_circ_g.8 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0212100-01:8 Os01t0212100-02:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.21103804 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6124945-6125026(+) 6121045-6125028(-) 6122218-6125032(-) |
Potential amino acid sequence |
MLLPLNHHGLRKLHHIFISSGHPILPFTNYMMLKALGIDNILGFDWPASPSPEAMIRALEVLYS LGILDEDAKLTVPLGFQVAEIPLDPMISKMILSANNFGCSDEILTIAAFLSVQSVWVSMRGVKK EFDEAKLRFAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIDIREQLVRIIKRFG IPLTSCDRDMEAVRKAIIAGAFAYACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVIY QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH*(+) MEKLANQIPKCCLFLELSTSYS*(-) MVNISSEHPKLLAERIIFEIIGSRGISATWKPRGTVSLASSSRIPREYRTSRARIIASGDGEAG QSNPKMLSIPRAFNII*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |