Detail information of Os01g0585600_circ_g.4


General Information
CircRNA Name Os01g0585600_circ_g.4
ID in PlantcircBase osa_circ_002348
Alias NA
Organism Oryza sativa
Position chr1: 22769786-22770036  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0585600
Parent gene annotation Protein of unknown function DUF632 domain containing protein. (O
s01t0585600-01);Hypothetical conserved gene. (Os01t0585600-02);S
imilar to proline-rich family protein. (Os01t0585600-03)
Parent gene strand +
Alternative splicing Os01g0585600_circ_g.2 Os01g0585600_circ_g.3 Os01g0585600_circ_g.5 Os01g0585600_circ_g.6 Os01g0585600_circ_g.7 Os01g0585600_circ_g.8 Os01g0585600_circ_g.9 Os01g0585600_circ_g.10
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAAGATCATGAACATTCTATTCTTTACTCTATTACAGTAAAGTTAAGTACGAAAGGACAAGA
AAAGTGTTTATTCGCAAGCAATCACTTCCAGAGAATgtattatatacagtatcttgtctctgtt
tagtgtttgccatcattttaatatttcttaatgctactattttataattccaactcctggaaac
acatatat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 251
Transcript exons: 22769786-22770036
GTATTATATACAGTATCTTGTCTCTGTTTAGTGTTTGCCATCATTTTAATATTTCTTAATGCTA
CTATTTTATAATTCCAACTCCTGGAAACACATATATAGATATAAAGCTACATCCATGGGAAATG
AAATGATTGGTTGTACTAAACTTTTCAAGATCATGAACATTCTATTCTTTACTCTATTACAGTA
AAGTTAAGTACGAAAGGACAAGAAAAGTGTTTATTCGCAAGCAATCACTTCCAGAGAAT

Genomic sequence GTATTATATACAGTATCTTGTCTCTGTTTAGTGTTTGCCATCATTTTAATATTTCTTAATGCTA
CTATTTTATAATTCCAACTCCTGGAAACACATATATAGATATAAAGCTACATCCATGGGAAATG
AAATGATTGGTTGTACTAAACTTTTCAAGATCATGAACATTCTATTCTTTACTCTATTACAGTA
AAGTTAAGTACGAAAGGACAAGAAAAGTGTTTATTCGCAAGCAATCACTTCCAGAGAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.256719788
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017